Fix / adapt the side-by-side review diff rendering.

- Make stuff that should be private in IDF_Diff really private
  and comment out a test that was the only call path for a previously
  public method.
- Apply the whitespace emphasizing on the normal file view as well
  and get finally rid of padLine()

.gitattributes

@@ -0,0 +1 @@
+src/IDF/version.php     export-subst

.gitignore

@@ -1,11 +1,19 @@
 *~
-tmp
+.buildpath
+.externalToolBuilders
+.project
+.settings
+.tx/config
+attachments
+indefero-*.zip
 src/IDF/conf/idf.php
 src/IDF/conf/idf.test.php
-www/test.php
-www/media/upload
-src/IDF/gettexttemplates
-indefero-*.zip
 src/IDF/conf/path.php
-.tx/config
+src/IDF/gettexttemplates
 src/IDF/locale/idf.pot.bak
+test/config.php
+test/test.db
+test/tmp
+tmp
+www/media/upload
+www/test.php

AUTHORS

@@ -1,30 +1,44 @@
 InDefero was originally created during summer 2008
 by Loïc d'Anterroches with the support of Céondo Ltd.
 
-Much appreciated contributors:
+Much appreciated contributors (in alphabetical order):
 
-    Nicolas Lassalle <http://www.beroot.org/> - Subversion support
-    bohwaz <http://bohwaz.net/>
-    Benjamin Jorand <benjamin.jorand@gmail.com> - Mercurial support
-    Baptiste Michaud <bactisme@gmail.com> - Subversion synchronization
-    Julien Issler 
+    Adrien Bustany <madcat@mymadcat.com>
+    Andrew Nguyen <andrew-git-indefero@na-consulting.net>
+    Baptiste Durand-Bret <bathizte@ozazar.org>
+    Baptiste Michaud <bactisme@gmail.com>           - Subversion sync
+    Benjamin Jorand <benjamin.jorand@gmail.com>     - Mercurial support
+    Brenda Wallace <shiny@cpan.org>
+    Brian Armstrong <brianar>
+    Charles Melbye <charlie@yourwiki.net>
+    Ciaran Gultnieks <ciaran@ciarang.com>
+    Daniel Steudler <steudlerdaniel@gmail.com>
+    David Feeney <davidf>
+    Denis Kot <denis.kot@gmail.com>                 - Russian translation
+    Dmitry Dulepov <dmitryd>
+    Fernando Sayago Gil <mikados.mikados@gmail.com> - Spanish translation
+    Jakub Viták <mainiak@gmail.com>                 - Czech translation
+    Janez Troha <http://www.dz0ny.info>             - Slovenian translation
+    Jean-Philippe Fleury <jpfleury>
+    Jerry <lxb429@gmail.com>                        - Chinese translation
+    Julien Issler <julien@issler.net>
+    Ludovic Bellière <xrogaan>
     Manuel Eidenberger <eidenberger@gmail.com>
-    Ciaran Gultnieks
+    Matthew Dawson <mjd>
+    Matías Halles <matias@halles.cl>
     Mehdi Kabab <http://pioupioum.fr/>
-    Sindre R. Myren
+    Nicolas Lassalle <nicolas@beroot.org>           - Subversion support
     Patrick Georgi <patrick.georgi@coresystems.de>
-    Adrien Bustany
-    Charles Melbye
-    Baptiste Durand-Bret
-    Andrew Nguyen
-    David Feeney
-    Denis Kot <denis.kot@gmail.com>
-    Samuel Suther
-    Ludovic Bellière
-    Brian Armstrong
-    Raphaël Emourgeon
-    Jakub Viták
-    Vladimir Solomatin
+    Raphaël Emourgeon <raphael>
+    Samuel Suther <info@suther.de>                  - German translation
+    Sindre R. Myren <sindrero@stud.ntnu.no>
+    Stewart Platt <stew@futurete.ch>
+    Stéphane Baron <sbaron>
+    Thomas Keller <me@thomaskeller.biz>             - Monotone support
+    Vladimir Solomatin <slash>
+    William Martin <william.martin@lcpc.fr>
+    Xavier Brochard <xavier@alternatif.org>
+    bohwaz <http://bohwaz.net/>
 
 And all the nice users who spent time reporting issues and promoting
 the project. The project could not live without them.

CONTRIBUTE.mdtext

@@ -104,12 +104,13 @@ without first talking to us.
 
 ## I am a translator
 
-We currently use (transifex)[http://trac.transifex.org] to help our
-users to translate indefero. You don't have to use it, but it's an
-easy way to do the job. You can visit the indefero page at transifex
-here : http://www.transifex.net/projects/p/indefero/c/indefero/
+We currently use [transifex](http://trac.transifex.org) to help our
+users translate indefero. You don't have to use it, but it's an easy
+way to do the job. You can visit the indefero page at transifex here:
+
+    http://www.transifex.net/projects/p/indefero/
 
 Please understand that your changes will not be commited instantly,
 but are sent to the maintainers e-mails before. Then, your changes
-will not be in the main repository until da-loic push the changes. In
-that way, try to do big changes with less submissions.
+will not be in the main repository until the maintainer pushs the
+changes. In that way, try to do big changes with less submissions.

INSTALL.mdtext

@@ -4,6 +4,12 @@ The installation of InDefero is composed of 2 parts, first the
 installation of the [Pluf framework](http://www.pluf.org) and second,
 the installation of InDefero by itself.
 
+## PHP modules for indefero
+
+Indefero need the GD module for PHP. It's named "php5-gd" in debian.
+
+    $ apt-get install php5-gd
+
 ## Recommended Layout of the Files
 
 If your server document root is in `/var/www` a good thing is to keep
@@ -37,6 +43,7 @@ docroot.
     $ sudo pear upgrade-all
     $ sudo pear install --alldeps Mail
     $ sudo pear install --alldeps Mail_mime
+    $ sudo pear install --alldeps Console_Getopt
 
 If you already have some of the PEAR packages installed with your
 distribution, the `Mail` package is often not up-to-date, 
@@ -125,6 +132,7 @@ The documentation is available in the `doc` folder.
 * Subversion: `doc/syncsvn.mdtext`.
 * Mercurial: `doc/syncmercurial.mdtext`.
 * Git: `doc/syncgit.mdtext`.
+* Monotone: `doc/syncmonotone.mdtext`
 
 ## For the Apache Webserver Users
 

Makefile

@@ -22,25 +22,40 @@
 #   sudo apt-get install python-setuptools
 #   sudo easy_install -U transifex-client
 
-PLUF_PATH=$(shell php -r "require_once('src/IDF/conf/path.php'); echo PLUF_PATH;")
 
-all help:
-	@echo "Rules for generate tarball :"
+
+.PHONY: help
+help:
+	@printf "Rules for generating distributable files :\n"
 	@for b in `git branch | sed "s/^. //g"`; do \
-		echo -e "\t"$$b"_tarball - Generate a zip archive of the "$$b" branch."; \
+		printf "\t"$$b"-zipfile - Generate a zip archive of the "$$b" branch.\n"; \
 	done
-	@echo -e "\nRules for internationnalization :";
-	@echo -e "\tpot-update - Update the POT file from HTML template and PHP source, then merge it with PO file"
-	@echo -e "\tpot-push - Send the POT file on transifex server"
-	@echo -e "\tpo-update - Merge POT file into PO file. POT is not regenerated."
-	@echo -e "\tpo-push - Send the all PO file on transifex server"
-	@echo -e "\tpo-pull - Get all PO file from transifex server"
+	@printf "\nRules for internationalization :\n";
+	@printf "\tpot-update - Update the POT file from HTML templates and PHP sources, then merge it with PO file.\n"
+	@printf "\tpot-push   - Send the POT file to the transifex server.\n"
+	@printf "\tpo-update  - Merge the POT file into the PO file. The POT is not regenerated.\n"
+	@printf "\tpo-push    - Send the all PO files to the transifex server.\n"
+	@printf "\tpo-pull    - Get all PO files from the transifex server.\n"
+	@printf "\tpo-stats   - Show translation statistics of all PO files.\n"
+	@printf "\nMisc Rules :\n";
+	@printf "\tdb-install - Install the database schema.\n"
+	@printf "\tdb-update  - Update the database schema.\n"
+
 
 #
-#   Internationnalization rule, POT & PO file manipulation
+#   Internationalization rule, POT & PO file manipulation
 #
+.PHONY: pluf_path
+pluf_path:
+ifeq (src/IDF/conf/path.php, $(wildcard src/IDF/conf/path.php))
+PLUF_PATH=$(shell php -r "require_once('src/IDF/conf/path.php'); echo PLUF_PATH;")
+else
+	@printf "File 'src/IDF/conf/path.php' don't exist. Please configure it !\n"
+	@exit 1
+endif
+ 
 .PHONY: pot-update po-update
-pot-update:
+pot-update: pluf_path
 	# Backup pot file
 	@if [ -e src/IDF/locale/idf.pot ]; then                     \
 	mv -f src/IDF/locale/idf.pot src/IDF/locale/idf.pot.bak;    \
@@ -49,19 +64,20 @@ pot-update:
 	# Extract string
 	@cd src; php $(PLUF_PATH)/extracttemplates.php IDF/conf/idf.php IDF/gettexttemplates
 	@cd src; for phpfile in `find . -iname "*.php"`; do \
-		echo "Parsing file : "$$phpfile; \
-		xgettext -o idf.pot -p ./IDF/locale/ --from-code=UTF-8 -j --keyword --keyword=__ --keyword=_n:1,2 -L PHP $$phpfile ; \
+		printf "Parsing file : "$$phpfile"\n"; \
+		xgettext -o idf.pot -p ./IDF/locale/ --from-code=UTF-8 -j \
+			--keyword --keyword=__ --keyword=_n:1,2 -L PHP $$phpfile ; \
 		done
 	#	Remove tmp folder
 	rm -Rf src/IDF/gettexttemplates
 	# Update PO
 	@make po-update
 
-po-update:
+po-update: pluf_path
 	@for pofile in `ls src/IDF/locale/*/idf.po`; do \
-		echo "Updating file : "$$pofile; \
+		printf "Updating file : "$$pofile"\n"; \
 		msgmerge -v -U $$pofile src/IDF/locale/idf.pot; \
-		echo ; \
+		printf "\n"; \
 	done
 
 #
@@ -72,22 +88,22 @@ check-tx-config:
 	@if [ ! -e .tx/config ]; then                                       \
 	mkdir -p .tx;                                                       \
 	touch .tx/config;                                                   \
-	echo "[main]" >> .tx/config;                                        \
-	echo "host = http://www.transifex.net" >> .tx/config;               \
-	echo "" >> .tx/config;                                              \
-	echo "[indefero.idfpot]" >> .tx/config;                             \
-	echo "file_filter = src/IDF/locale/<lang>/idf.po" >> .tx/config;    \
-	echo "source_file = src/IDF/locale/idf.pot" >> .tx/config;          \
-	echo "source_lang = en" >> .tx/config;                              \
+	printf "[main]\n" >> .tx/config;                                        \
+	printf "host = http://www.transifex.net\n" >> .tx/config;               \
+	printf "\n" >> .tx/config;                                              \
+	printf "[indefero.idfpot]\n" >> .tx/config;                             \
+	printf "file_filter = src/IDF/locale/<lang>/idf.po\n" >> .tx/config;    \
+	printf "source_file = src/IDF/locale/idf.pot\n" >> .tx/config;          \
+	printf "source_lang = en\n" >> .tx/config;                              \
 	fi
-	@if [ ! -e $(HOME)/.transifexrc ]; then								\
+	@if [ ! -e $(HOME)/.transifexrc ]; then					\
 	touch $(HOME)/.transifexrc;												\
-	echo "[http://www.transifex.net]" >> $(HOME)/.transifexrc;				\
-	echo "username = " >> $(HOME)/.transifexrc;								\
-	echo "token = " >> $(HOME)/.transifexrc;									\
-	echo "password = " >> $(HOME)/.transifexrc;								\
-	echo "hostname = http://www.transifex.net" >> $(HOME)/.transifexrc;		\
-	echo "You must edit the file ~/.transifexrc to setup your transifex account (login & password) !";		\
+	printf "[http://www.transifex.net]\n" >> $(HOME)/.transifexrc;						\
+	printf "username = \n" >> $(HOME)/.transifexrc;								\
+	printf "token = \n" >> $(HOME)/.transifexrc;								\
+	printf "password = \n" >> $(HOME)/.transifexrc;								\
+	printf "hostname = http://www.transifex.net\n" >> $(HOME)/.transifexrc;					\
+	printf "You must edit the file ~/.transifexrc to setup your transifex account (login & password) !\n";	\
 	exit 1;																\
 	fi
 
@@ -98,13 +114,37 @@ po-push: check-tx-config
 	@tx push -t
 
 po-pull: check-tx-config
+	# Save PO
+	@for pofile in `ls src/IDF/locale/*/idf.po`; do \
+	    cp $$pofile $$pofile".save"; \
+	done
+	# Get new one
 	@tx pull -a
+	# Merge Transifex PO into local PO (so fuzzy entry is correctly saved)
+	@for pofile in `ls src/IDF/locale/*/idf.po`; do \
+	    msgmerge -U $$pofile".save" $$pofile; \
+	    rm -f $$pofile; \
+	    mv $$pofile".save" $$pofile; \
+	done
+
+po-stats:
+	@msgfmt --statistics -v src/IDF/locale/idf.pot
+	@for pofile in `ls src/IDF/locale/*/idf.po`; do \
+	    msgfmt --statistics -v $$pofile; \
+	done
 
 #
-#   Generic rule to build a tarball of indefero for a specified branch
-#   ex: make master_tarball
-#       make dev_tarball
+#   Generic rule to build a zipfile of indefero for a specified branch
+#   ex: make master_zipfile
+#       make develop_zipfile
 #
-%_tarball:
-	@git archive --format=zip --prefix="indefero/" $(@:_tarball=) > indefero-$(@:_tarball=)-`git log $(@:_tarball=) -n 1 --pretty=format:%H`.zip
+%-zipfile:
+	@git archive --format=zip --prefix="indefero/" $(@:-zipfile=) \
+		> indefero-$(@:-zipfile=)-`git log $(@:-zipfile=) -n 1 \
+		--pretty=format:%h`.zip
 
+db-install:
+	@cd src && php $(PLUF_PATH)/migrate.php --conf=IDF/conf/idf.php -a -d -i
+
+db-update:
+	@cd src && php $(PLUF_PATH)/migrate.php --conf=IDF/conf/idf.php -a -d

NEWS.mdtext

@@ -0,0 +1,164 @@
+# InDefero 1.2 - xxx xxx xx xx:xx 2011 UTC
+
+ATTENTION: You need Pluf [324ae60b](http://projects.ceondo.com/p/pluf/source/commit/324ae60b)
+or newer to properly run this version of Indefero!
+
+## New Features
+
+- Indefero's issue tracker can now bi-directionally link issues with variable, configurable
+  terms, such as "is related to", "is blocked by" or "is duplicated by" (issue 638)
+- When you search for issues, the results can further be refined by issue state (open or closed)
+  and label (partially implements issue 548)
+- Mercurial source views now show parent revisions (if any) and detailed change information
+- Subversion source views now show detailed change information (issue 622)
+- File download URLs now contain the file name rather than the upload id; old links still work though (issues 559 and 686)
+- Display monotone file and directory attributes in the tree and file view
+  (needs a monotone with an interface version of 13.1 or newer)
+- The context area is now kept in view when a page scrolls down several pages
+- Add a summary section to the issue tracker with statistics about open/close issues,
+  tags of open issue, and count of open tickets for each owner.
+- Improved home page with an customizable icon for each project.
+- The download section provide MD5 for each files.
+- Wiki page have now a css for printer output (issue 713)
+
+## Bugfixes
+
+- The SVN interface acts more robust if an underlying repository has been restructured (issues 364 and 721)
+- monotone zip archive entries now all carry the revision date as mtime (issue 645)
+- Timeline only displays filter options for items a user has actually access to (issue 655)
+- The log, tags and branches parsers for Mercurial are more robust now (issue 663)
+- Fix SSH public key parsing issues and improve the check for existing, uploaded keys (issue 679)
+- Diff views now show empty context lines for git and hg again (issue 688)
+- Let the SVN command line client not store the login credentials we give him as arguments
+- The usher section in the forge administration no longer displays a bogus
+  server enty in case no monotone server is configured in the connected
+  usher instance
+- Prevent a timeout from popping up when Usher is restarted (issue 695)
+- The SyncMonotone plugin now cleans up partial artifacts it created during the addition of
+  a new project or monotone key, in case an error popped up in the middle (issue 697)
+- Indefero now sends the MD5 checksum as HTTP header when downloading a file from the
+  download area. Additionally, a unneeded redirect has been removed. (issue 716)
+- Source links without a specific revision did not work due to a wrong regex (issue 730)
+- Better error detection and reporting in the SyncMonotone plugin
+  ATTENTION: This needs Pluf 46b7f251 or newer!
+- Fix the branch links users of the Subversion frontend get when they enter a wrong revision
+  and only display this list if there are any branches available for all SCMs
+- If git's author name is not encoded in an UTF-8 compatible encoding, skip the author lookup,
+  as we have no information what the author string is actually encoded in
+- Indefero no longer displays an empty parents paragraph in the commit view for root revisions of
+  a git repository
+- Indefero now only shows the tags of the closed and not the open issues in the closed issues list
+- Avatar URL generation use correctly the configuration (issue 732)
+- Git cron job doesn't erase anymore manually added keys (issue 247)
+
+## Documentation
+
+- The documentation on the setup of the monotone plugin has been improved.
+
+## Translations
+
+# InDefero 1.1.2 - Thu May 26 07:42:25 2011 UTC
+
+## Bugfixes
+
+- Fix tags extraction from git repository (issue 675)
+- Fix SSH validation method (issue 671)
+- Fix malformed URL in the RSS (issue 666)
+- Fix validateRevision call for Mercurial Scm (issue 657)
+
+## Translations
+
+- Missing word in French translation (issue 672)
+- Update Spanish translation
+
+# InDefero 1.1.1 - Mon Mar 28 15:52 2011 UTC
+
+## Bugfixes
+
+- Fix an incompatibility with Python 3.1 in gitserve.py (issue 554)
+- Fix PHP error when the commit view shows a commit with changed binary files (issue 643)
+- A migration problem prevented the preferences page being displayed properly (issues 644 and 653)
+- Fix PHP error when trying to create Mercurial source archives (issue 648)
+- Improve the French translation (issue 651)
+- Registration page missed a link to password recovery that was mentioned in a form error (issue 652)
+
+# InDefero 1.1 - Sun Mar 20 11:44 2011 UTC
+
+## New Features
+
+* _Version control_:
+ - Support for the monotone Version Control system (see [[InstallationScmMonotone]])
+ - Display detailed changeset information in the commit details (git, mtn) (issue 544)
+ - Show branch in the commit details (git, mtn, hg) (issue 450)
+ - Render branch and tag names in a popup and make them filterable (git, hg, mtn) (issue 601)
+
+* _Issue tracking_:
+ - Forge-wide and per-project watch lists of starred issues (issue 589)
+ - Configure a default issue template for each project (issues 212 and 540)
+ - Pick default issue labels from the configured project settings (issue 556)
+ - Navigate to a preceding / following issue in the issue detail view
+ - Many new text syntaxes to auto-link revisions (see [[AutomaticLinks]], issue 569)
+
+* _Documentation wiki_:
+ - Automatically create a table of contents on wiki pages (issue 350)
+ - Allow the usage of text labels for Wiki text links (issue 456)
+
+* _Other_:
+ - Enhanced user profile page (issue 510)
+ - Manage multiple (commit) emails in the account settings (issues 136 and 500)
+ - Filter the timeline and its feed by item type (issue 543)
+ - Add multiple email addresses for project notifications (issue 372)
+ - Direct links to other projects via the new `Project List` dropdown
+ - InDefero gained a favicon (issue 594)
+
+## Bugfixes
+
+- Fix `Need SSH_ORIGINAL_COMMAND in environment` error for git sync (issue 198)
+- Added an option to disable lengthy project size calculation in the forge (issue 403)
+- Fix a problem when deleting an orphaned git repository (issue 467)
+- Ignore XML parsing problems when trying to retrieve commit messages for svn (issues 469 and 518)
+- Sort the project list by the display name of the project (issue 477)
+- Project creation form now has a short description field as well (issue 479)
+- Add more file extensions supported by our in-tree prettify version (issues 490 and 567)
+- Improve the parsing of hg's log output (issues 507 and 508)
+- Do not clean `<ins>` and `<del>` HTML markup from user input (issue 509)
+- Improve HTML validation by switching from `strict` to `transitional` DOCTYPE (issue 511)
+- Properly handle git commits without a changelog title (issue 520)
+- Improve BSD compatibility in shell scripts (issue 526)
+- Properly render inner whitespaces in viewed issue attachments (issue 528)
+- Support for uploading SSH keys without optional comment (issue 531)
+- Recognize irc: and git: protocols in Markdown renderer (issue 546)
+- New config option `git_core_quotepath` to handle non-ASCII git file names (issue 553)
+- Ensured that active views are rendered in the menu as such (issue 555)
+- Add CSS for nested and mixed ordered and unordered lists (issue 557)
+- Directories are now sorted before files in source tree views (issue 573)
+- File attachments now have explicit view and download links in issue views (issue 575)
+- Display anonymous access URL when user has no SSH key registered (issue 588)
+- Improve the rendering of tag lists in issue views (issue 591)
+- Improved error page when a commit or branch was not found (issue 609)
+- Disable browser autocomplete of password fields in the account settings (issue 616)
+- Improvements in the automatic linker parser (issue 618)
+- The `createIssue` API method did not check the API authentication (issue 619)
+- Reduce the memory footprint and compatibility of the internal diff parser (issues 627 and 633)
+- Print the git branches and tags in bold which contain the currently displayed revision
+
+## Documentation
+
+- Document how to contribute to Indefero in `CONTRIBUTE.mdtext` (issue 486)
+- Note possible problems with mbstring.func_overload in `INSTALL.mdtext` (issue 481)
+- Improve links to Markdown documentation (issue 489)
+- Explain purpose of `idf_strong_key_check` in `idf.php-dist` (issue 516)
+
+## Translations
+
+- Spanish translation added
+- Started with a Simplified Chinese translation (issue 521)
+- Started with a Russian translation
+- Updates and fixes to the French translation (issue 574)
+- Updates and fixes to the German translation
+- English source language has been improved (issues 441, 478, and 631)
+
+# InDefero 1.0 - Tue Apr 20 07:00 2010 UTC
+
+First stable release.
+

doc/syncmonotone.mdtext

@@ -25,7 +25,7 @@ If you install monotone from source (<http://monotone.ca/downloads.php>),
 please follow the `INSTALL` document which comes with the software.
 It contains detailed instructions, including all needed dependencies.
 
-## Choose your indefero setup
+## Choose your indefero (IDF) setup
 
 The monotone plugin can be used in several different ways:
 
@@ -112,14 +112,40 @@ The monotone plugin can be used in several different ways:
             ^D
             $ chmod 600 usher.conf
 
+    **ATTENTION:** Do _not_ configure a default monotone server key in `usher.conf`,
+    otherwise the individual server key that IDF creates for each project is
+    not used and this could cause problems.
+
     Your indefero www user needs later write access to `usher.conf` and
     `projects/`. There are two ways of setting this up:
 
-    * Make the usher user the web user, for example via Apache's `suexec`
-    * Use acls, like this:
+    * Make the usher user the web user, for example via Apache's `suexec`.
+      This is however a bit clumsy.
+    * Preferred: Use Access Control Lists (ACLs), like this:
 
+            #
+            # Linux
+            #
             $ setfacl -m u:www:rw usher.conf
             $ setfacl -m d:u:www:rwx projects/
+            $ setfacl -m d:u:usher:rwx projects/
+            #
+            # FreeBSD
+            #
+            $ setfacl -m user:www:rw::allow usher.conf
+            $ setfacl -m user:www:rwxp:fd:allow projects/
+            $ setfacl -m user:usher:rwxp:fd:allow projects/
+            #
+            # Mac OS X
+            #
+            chmod +a '_www allow read,write' usher.conf
+            chmod +a '_www allow read,write,delete,add_file,add_subdirectory,file_inherit,directory_inherit' projects/
+            chmod +a 'usher allow read,write,delete,add_file,add_subdirectory,file_inherit,directory_inherit' projects/
+
+      In each example's last line, `usher` is the user which is executing
+      the usher instance. **It is very important to add this line, otherwise
+      usher won't be able to read and write into the initial file system
+      setup IDF creates!**
 
 5. Wrap a daemonizer around usher, for example supervise from daemontools
    (<http://cr.yp.to/damontools.html>):

logo/no_logo.svg

@@ -0,0 +1,173 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<!-- Created with Inkscape (http://www.inkscape.org/) -->
+
+<svg
+   xmlns:dc="http://purl.org/dc/elements/1.1/"
+   xmlns:cc="http://creativecommons.org/ns#"
+   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+   xmlns:svg="http://www.w3.org/2000/svg"
+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
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+     inkscape:groupmode="layer"
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+</svg>

phpunit.xml

@@ -0,0 +1,27 @@
+<phpunit backupGlobals="true"
+         backupStaticAttributes="false"
+         bootstrap="test/bootstrap.php"
+         convertErrorsToExceptions="true"
+         convertNoticesToExceptions="true"
+         convertWarningsToExceptions="true"
+         strict="false"
+         verbose="true">
+
+    <testsuites>
+        <testsuite name="Everything">
+            <directory>test/IDF/</directory>
+        </testsuite>
+    </testsuites>
+
+    <filter>
+        <whitelist>
+            <directory suffix=".php">src/IDF</directory>
+            <exclude>
+                <directory suffix=".php">src/IDF/Tests</directory>
+                <directory suffix=".php">src/IDF/conf</directory>
+                <file>src/IDF/version.php</file>
+            </exclude>
+        </whitelist>
+    </filter>
+</phpunit>
+

run-tests

@@ -0,0 +1,14 @@
+#!/usr/bin/env php
+<?php
+
+$xmlfile = dirname(__FILE__) .'/test/report.xml';
+passthru('phpunit --coverage-clover='.$xmlfile);
+$xml = simplexml_load_string(file_get_contents($xmlfile));
+unlink($xmlfile);
+printf(
+   '>>> code coverage %s/%s (%s%%)'."\n",
+   $xml->project->metrics['coveredstatements'],
+   $xml->project->metrics['statements'],
+   round(($xml->project->metrics['coveredstatements']/(float)$xml->project->metrics['statements']) * 100.0, 2)
+);
+

scripts/gitcron.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

scripts/gitpostupdate.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008-2010 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

scripts/gitserve.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

scripts/gitserve.py

@@ -3,7 +3,7 @@
 #
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -23,14 +23,17 @@
 
 import os
 import sys
-import commands
-import traceback
+import subprocess
+
+SCRIPTDIR = os.path.abspath(__file__).rsplit(os.path.sep, 1)[0]
+GITSERVEPHP = '%s/gitserve.php' % SCRIPTDIR
+process = subprocess.Popen(['php', GITSERVEPHP, sys.argv[1]],
+                stdout=subprocess.PIPE, stderr=subprocess.PIPE)
+output = str.encode("\n").join(process.communicate()).strip()
+status = process.wait()
 
-n = len("/gitserve.py")
-GITSERVEPHP = '%s/gitserve.php' % traceback.extract_stack(limit=1)[0][0][0:-n]
-status, output = commands.getstatusoutput('php %s %s' % (GITSERVEPHP, sys.argv[1]))
 if status == 0:
     os.execvp('git', ['git', 'shell', '-c', output.strip()])
 else:
-    sys.stderr.write("%s\n" % output)
+    sys.stderr.write("%s\n" % output.strip())
 sys.exit(1)

scripts/hgchangegroup.php

@@ -4,7 +4,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008-2010 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

scripts/mtnpostpush.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008-2010 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

scripts/queuecron.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

scripts/svnpostcommit.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008-2010 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

scripts/svnpostrevpropchange.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008-2010 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Commit.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Conf.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Config/DataProxy.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Diff.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -27,17 +27,15 @@
  */
 class IDF_Diff
 {
-    public $repo = '';
-    public $diff = '';
+    public $path_strip_level = 0;
     protected $lines = array();
 
     public $files = array();
 
-    public function __construct($diff, $repo='')
+    public function __construct($diff, $path_strip_level = 0)
     {
-        $this->repo = $repo;
-        $this->diff = $diff;
-        $this->lines = preg_split("/\015\012|\015|\012/", $diff);
+        $this->path_strip_level = $path_strip_level;
+        $this->lines = IDF_FileUtil::splitIntoLines($diff, true);
     }
 
     public function parse()
@@ -49,180 +47,181 @@ class IDF_Diff
         $files = array();
         $indiff = false; // Used to skip the headers in the git patches
         $i = 0; // Used to skip the end of a git patch with --\nversion number
-        foreach ($this->lines as $line) {
-            $i++;
-            if (0 === strpos($line, '--') and isset($this->lines[$i])
-                and preg_match('/^\d+\.\d+\.\d+\.\d+$/', $this->lines[$i])) {
-                break;
+        $diffsize = count($this->lines);
+        while ($i < $diffsize) {
+            // look for the potential beginning of a diff
+            if (substr($this->lines[$i], 0, 4) !== '--- ') {
+                $i++;
+                continue;
             }
-            if (0 === strpos($line, 'diff --git a')) {
-                $current_file = self::getFile($line);
-                $files[$current_file] = array();
-                $files[$current_file]['chunks'] = array();
-                $files[$current_file]['chunks_def'] = array();
-                $current_chunk = 0;
-                $indiff = true;
+
+            // we're inside a diff candiate
+            $oldfileline = $this->lines[$i++];
+            $newfileline = $this->lines[$i++];
+            if (substr($newfileline, 0, 4) !== '+++ ') {
+                // not a valid diff here, move on
                 continue;
-            } else if (preg_match('#^diff -r [^\s]+ -r [^\s]+ (.+)$#', $line, $matches)) {
-                $current_file = $matches[1];
-                $files[$current_file] = array();
-                $files[$current_file]['chunks'] = array();
-                $files[$current_file]['chunks_def'] = array();
-                $current_chunk = 0;
-                $indiff = true;
-                continue;
-            } else if (!$indiff && 0 === strpos($line, '=========')) {
-                // ignore pseudo stanzas with a hint of a binary file
-                if (preg_match("/^# (.+) is binary/", $this->lines[$i]))
-                    continue;
-                // by default always use the new name of a possibly renamed file
-                $current_file = self::getMtnFile($this->lines[$i+1]);
-                // mtn 0.48 and newer set /dev/null as file path for dropped files
-                // so we display the old name here
-                if ($current_file == "/dev/null") {
-                    $current_file = self::getMtnFile($this->lines[$i]);
+            }
+
+            // use new file name by default
+            preg_match("/^\+\+\+ ([^\t\n\r]+)/", $newfileline, $m);
+            $current_file = $m[1];
+            if ($current_file === '/dev/null') {
+                // except if it's /dev/null, use the old one instead
+                // eg. mtn 0.48 and newer
+                preg_match("/^--- ([^\t\r\n]+)/", $oldfileline, $m);
+                $current_file = $m[1];
+            }
+            if ($this->path_strip_level > 0) {
+                $fileparts = explode('/', $current_file, $this->path_strip_level+1);
+                $current_file = array_pop($fileparts);
+            }
+            $current_chunk = 0;
+            $files[$current_file] = array();
+            $files[$current_file]['chunks'] = array();
+            $files[$current_file]['chunks_def'] = array();
+
+            while ($i < $diffsize && substr($this->lines[$i], 0, 3) === '@@ ') {
+                $elems = preg_match('/@@ -(\d+),?(\d*) \+(\d+),?(\d*) @@.*/',
+                                    $this->lines[$i++], $results);
+                if ($elems != 1) {
+                    // hunk is badly formatted
+                    break;
                 }
-                if ($current_file == "/dev/null") {
-                    throw new Exception(
-                        "could not determine path from diff"
-                    );
-                }
-                $files[$current_file] = array();
-                $files[$current_file]['chunks'] = array();
-                $files[$current_file]['chunks_def'] = array();
-                $current_chunk = 0;
-                $indiff = true;
-                continue;
-            } else if (0 === strpos($line, 'Index: ')) {
-                $current_file = self::getSvnFile($line);
-                $files[$current_file] = array();
-                $files[$current_file]['chunks'] = array();
-                $files[$current_file]['chunks_def'] = array();
-                $current_chunk = 0;
-                $indiff = true;
-                continue;
-            }
-            if (!$indiff) {
-                continue;
-            }
-            if (0 === strpos($line, '@@ ')) {
-                $files[$current_file]['chunks_def'][] = self::getChunk($line);
+                $delstart = $results[1];
+                $dellines = $results[2] === '' ? 1 : $results[2];
+                $addstart = $results[3];
+                $addlines = $results[4] === '' ? 1 : $results[4];
+
+                $files[$current_file]['chunks_def'][] = array(
+                    array($delstart, $dellines), array($addstart, $addlines)
+                );
                 $files[$current_file]['chunks'][] = array();
+
+                while ($i < $diffsize && ($addlines >= 0 || $dellines >= 0)) {
+                    $linetype = $this->lines[$i] != '' ? $this->lines[$i][0] : false;
+                    $content = substr($this->lines[$i], 1);
+                    switch ($linetype) {
+                        case ' ':
+                            $files[$current_file]['chunks'][$current_chunk][] =
+                                array($delstart, $addstart, $content);
+                            $dellines--;
+                            $addlines--;
+                            $delstart++;
+                            $addstart++;
+                            break;
+                        case '+':
+                            $files[$current_file]['chunks'][$current_chunk][] =
+                                array('', $addstart, $content);
+                            $addlines--;
+                            $addstart++;
+                            break;
+                        case '-':
+                            $files[$current_file]['chunks'][$current_chunk][] =
+                                array($delstart, '', $content);
+                            $dellines--;
+                            $delstart++;
+                            break;
+                        case '\\':
+                            // no new line at the end of this file; remove pseudo new line from last line
+                            $cur = count($files[$current_file]['chunks'][$current_chunk]) - 1;
+                            $files[$current_file]['chunks'][$current_chunk][$cur][2] =
+                                rtrim($files[$current_file]['chunks'][$current_chunk][$cur][2], "\r\n");
+                            continue;
+                        default:
+                            break 2;
+                    }
+                    $i++;
+                }
                 $current_chunk++;
-                $lline = $files[$current_file]['chunks_def'][$current_chunk-1][0][0];
-                $rline = $files[$current_file]['chunks_def'][$current_chunk-1][1][0];
-                continue;
-            }
-            if (0 === strpos($line, '---') or 0 === strpos($line, '+++')) {
-                continue;
-            }
-            if (0 === strpos($line, '-')) {
-                $files[$current_file]['chunks'][$current_chunk-1][] = array($lline, '', substr($line, 1));
-                $lline++;
-                continue;
-            }
-            if (0 === strpos($line, '+')) {
-                $files[$current_file]['chunks'][$current_chunk-1][] = array('', $rline, substr($line, 1));
-                $rline++;
-                continue;
-            }
-            if (0 === strpos($line, ' ')) {
-                $files[$current_file]['chunks'][$current_chunk-1][] = array($lline, $rline, substr($line, 1));
-                $rline++;
-                $lline++;
-                continue;
-            }
-            if ($line == '') {
-                $files[$current_file]['chunks'][$current_chunk-1][] = array($lline, $rline, $line);
-                $rline++;
-                $lline++;
-                continue;
             }
         }
         $this->files = $files;
         return $files;
     }
 
-    public static function getFile($line)
-    {
-        $line = substr(trim($line), 10);
-        $n = (int) strlen($line)/2;
-        return trim(substr($line, 3, $n-3));
-    }
-
-    public static function getSvnFile($line)
-    {
-        return substr(trim($line), 7);
-    }
-
-    public static function getMtnFile($line)
-    {
-        preg_match("/^[+-]{3} ([^\t]+)/", $line, $m);
-        return $m[1];
-    }
-
     /**
      * Return the html version of a parsed diff.
      */
     public function as_html()
     {
         $out = '';
-        foreach ($this->files as $filename=>$file) {
+        foreach ($this->files as $filename => $file) {
             $pretty = '';
             $fileinfo = IDF_FileUtil::getMimeType($filename);
             if (IDF_FileUtil::isSupportedExtension($fileinfo[2])) {
                 $pretty = ' prettyprint';
             }
-            $out .= "\n".'<table class="diff" summary="">'."\n";
-            $out .= '<tr id="diff-'.md5($filename).'"><th colspan="3">'.Pluf_esc($filename).'</th></tr>'."\n";
+
             $cc = 1;
+            $offsets = array();
+            $contents = array();
+
             foreach ($file['chunks'] as $chunk) {
                 foreach ($chunk as $line) {
-                    if ($line[0] and $line[1]) {
-                        $class = 'diff-c';
-                    } elseif ($line[0]) {
-                        $class = 'diff-r';
+                    list($left, $right, $content) = $line;
+                    if ($left and $right) {
+                        $class = 'context';
+                    } elseif ($left) {
+                        $class = 'removed';
                     } else {
-                        $class = 'diff-a';
+                        $class = 'added';
                     }
-                    $line_content = self::padLine(Pluf_esc($line[2]));
-                    $out .= sprintf('<tr class="diff-line"><td class="diff-lc">%s</td><td class="diff-lc">%s</td><td class="%s%s mono">%s</td></tr>'."\n", $line[0], $line[1], $class, $pretty, $line_content);
+
+                    $offsets[] = sprintf('<td>%s</td><td>%s</td>', $left, $right);
+                    $content = IDF_FileUtil::emphasizeControlCharacters(Pluf_esc($content));
+                    $contents[] = sprintf('<td class="%s%s mono">%s</td>', $class, $pretty, $content);
+                }
+                if (count($file['chunks']) > $cc) {
+                    $offsets[]  = '<td class="next">...</td><td class="next">...</td>';
+                    $contents[] = '<td class="next"></td>';
                 }
-                if (count($file['chunks']) > $cc)
-                $out .= '<tr class="diff-next"><td>...</td><td>...</td><td>&nbsp;</td></tr>'."\n";
                 $cc++;
             }
-            $out .= '</table>';
+
+            list($added, $removed) = end($file['chunks_def']);
+
+            $added = $added[0] + $added[1];
+            $leftwidth = 1;
+            if ($added > 0)
+                $leftwidth = ((ceil(log10($added)) + 1) * 8) + 12;
+
+            $removed = $removed[0] + $removed[1];
+            $rightwidth = 1;
+            if ($removed > 0)
+                $rightwidth = ((ceil(log10($removed)) + 1) * 8) + 12;
+
+            $inner_linecounts =
+              '<table class="diff-linecounts">' ."\n".
+                '<colgroup><col width="'.$leftwidth.'" /><col width="'. $rightwidth.'" /></colgroup>' ."\n".
+                '<tr class="line">' .
+                  implode('</tr>'."\n".'<tr class="line">', $offsets).
+                '</tr>' ."\n".
+              '</table>' ."\n";
+
+
+            $inner_contents =
+              '<table class="diff-contents">' ."\n".
+                '<tr class="line">' .
+                  implode('</tr>'."\n".'<tr class="line">', $contents) .
+                '</tr>' ."\n".
+              '</table>' ."\n";
+
+            $out .= '<table class="diff unified">' ."\n".
+                      '<colgroup><col width="'.($leftwidth + $rightwidth + 1).'" /><col width="*" /></colgroup>' ."\n".
+                      '<tr id="diff-'.md5($filename).'">'.
+                        '<th colspan="2">'.Pluf_esc($filename).'</th>'.
+                      '</tr>' ."\n".
+                      '<tr>' .
+                        '<td>'. $inner_linecounts .'</td>'. "\n".
+                        '<td><div class="scroll">'. $inner_contents .'</div></td>'.
+                      '</tr>' ."\n".
+                    '</table>' ."\n";
         }
+
         return Pluf_Template::markSafe($out);
     }
 
-
-    public static function padLine($line)
-    {
-        $line = str_replace("\t", '    ', $line);
-        $n = strlen($line);
-        for ($i=0;$i<$n;$i++) {
-            if (substr($line, $i, 1) != ' ') {
-                break;
-            }
-        }
-        return str_repeat('&nbsp;', $i).substr($line, $i);
-    }
-
-    /**
-     * @return array array(array(start, n), array(start, n))
-     */
-    public static function getChunk($line)
-    {
-        $elts = explode(' ', $line);
-        $res = array();
-        for ($i=1;$i<3;$i++) {
-            $res[] = explode(',', trim(substr($elts[$i], 1)));
-        }
-        return $res;
-    }
-
     /**
      * Review patch.
      *
@@ -245,12 +244,12 @@ class IDF_Diff
      */
     public function fileCompare($orig, $chunks, $filename, $context=10)
     {
-        $orig_lines = preg_split("/\015\012|\015|\012/", $orig);
+        $orig_lines = IDF_FileUtil::splitIntoLines($orig);
         $new_chunks = $this->mergeChunks($orig_lines, $chunks, $context);
         return $this->renderCompared($new_chunks, $filename);
     }
 
-    public function mergeChunks($orig_lines, $chunks, $context=10)
+    private function mergeChunks($orig_lines, $chunks, $context=10)
     {
         $spans = array();
         $new_chunks = array();
@@ -347,40 +346,115 @@ class IDF_Diff
         return $nnew_chunks;
     }
 
-
-    public function renderCompared($chunks, $filename)
+    private function renderCompared($chunks, $filename)
     {
         $fileinfo = IDF_FileUtil::getMimeType($filename);
         $pretty = '';
         if (IDF_FileUtil::isSupportedExtension($fileinfo[2])) {
             $pretty = ' prettyprint';
         }
-        $out = '';
+
         $cc = 1;
-        $i = 0;
+        $left_offsets   = array();
+        $left_contents  = array();
+        $right_offsets  = array();
+        $right_contents = array();
+
+        $max_lineno_left = $max_lineno_right = 0;
+
         foreach ($chunks as $chunk) {
             foreach ($chunk as $line) {
-                $line1 = '&nbsp;';
-                $line2 = '&nbsp;';
-                $line[2] = (strlen($line[2])) ? self::padLine(Pluf_esc($line[2])) : '&nbsp;';
-                if ($line[0] and $line[1]) {
-                    $class = 'diff-c';
-                    $line1 = $line2 = $line[2];
-                } elseif ($line[0]) {
-                    $class = 'diff-r';
-                    $line1 = $line[2];
-                } else {
-                    $class = 'diff-a';
-                    $line2 = $line[2];
-                }
-                $out .= sprintf('<tr class="diff-line"><td class="diff-lc">%s</td><td class="%s mono%s"><code>%s</code></td><td class="diff-lc">%s</td><td class="%s mono%s"><code>%s</code></td></tr>'."\n", $line[0], $class, $pretty, $line1, $line[1], $class, $pretty, $line2);
-            }
-            if (count($chunks) > $cc)
-                $out .= '<tr class="diff-next"><td>...</td><td>&nbsp;</td><td>...</td><td>&nbsp;</td></tr>'."\n";
-            $cc++;
-            $i++;
-        }
-        return Pluf_Template::markSafe($out);
+                $left    = '';
+                $right   = '';
+                $content = IDF_FileUtil::emphasizeControlCharacters(Pluf_esc($line[2]));
 
+                if ($line[0] and $line[1]) {
+                    $class = 'context';
+                    $left = $right = $content;
+                } elseif ($line[0]) {
+                    $class = 'removed';
+                    $left = $content;
+                } else {
+                    $class = 'added';
+                    $right = $content;
+                }
+
+                $left_offsets[]   = sprintf('<td>%s</td>', $line[0]);
+                $right_offsets[]  = sprintf('<td>%s</td>', $line[1]);
+                $left_contents[]  = sprintf('<td class="%s%s mono">%s</td>', $class, $pretty, $left);
+                $right_contents[] = sprintf('<td class="%s%s mono">%s</td>', $class, $pretty, $right);
+
+                $max_lineno_left  = max($max_lineno_left, $line[0]);
+                $max_lineno_right = max($max_lineno_right, $line[1]);
+            }
+
+            if (count($chunks) > $cc) {
+                $left_offsets[]   = '<td class="next">...</td>';
+                $right_offsets[]  = '<td class="next">...</td>';
+                $left_contents[]  = '<td></td>';
+                $right_contents[] = '<td></td>';
+            }
+            $cc++;
+        }
+
+        $leftwidth = 1;
+        if ($max_lineno_left > 0)
+            $leftwidth = ((ceil(log10($max_lineno_left)) + 1) * 8) + 12;
+
+        $rightwidth = 1;
+        if ($max_lineno_right > 0)
+            $rightwidth = ((ceil(log10($max_lineno_right)) + 1) * 8) + 12;
+
+        $inner_linecounts_left =
+          '<table class="diff-linecounts">' ."\n".
+            '<colgroup><col width="'.$leftwidth.'" /></colgroup>' ."\n".
+            '<tr class="line">' .
+              implode('</tr>'."\n".'<tr class="line">', $left_offsets).
+            '</tr>' ."\n".
+          '</table>' ."\n";
+
+        $inner_linecounts_right =
+          '<table class="diff-linecounts">' ."\n".
+            '<colgroup><col width="'.$rightwidth.'" /></colgroup>' ."\n".
+            '<tr class="line">' .
+              implode('</tr>'."\n".'<tr class="line">', $right_offsets).
+            '</tr>' ."\n".
+          '</table>' ."\n";
+
+        $inner_contents_left =
+          '<table class="diff-contents">' ."\n".
+            '<tr class="line">' .
+              implode('</tr>'."\n".'<tr class="line">', $left_contents) .
+            '</tr>' ."\n".
+          '</table>' ."\n";
+
+        $inner_contents_right =
+          '<table class="diff-contents">' ."\n".
+            '<tr class="line">' .
+              implode('</tr>'."\n".'<tr class="line">', $right_contents) .
+            '</tr>' ."\n".
+          '</table>' ."\n";
+
+        $out =
+          '<table class="diff context">' ."\n".
+            '<colgroup>' .
+              '<col width="'.($leftwidth + 1).'" /><col width="*" />' .
+              '<col width="'.($rightwidth + 1).'" /><col width="*" />' .
+            '</colgroup>' ."\n".
+            '<tr id="diff-'.md5($filename).'">'.
+              '<th colspan="4">'.Pluf_esc($filename).'</th>'.
+            '</tr>' ."\n".
+            '<tr>' .
+              '<th colspan="2">'.__('Old').'</th><th colspan="2">'.__('New').'</th>' .
+            '</tr>'.
+            '<tr>' .
+              '<td>'. $inner_linecounts_left .'</td>'. "\n".
+              '<td><div class="scroll">'. $inner_contents_left .'</div></td>'. "\n".
+              '<td>'. $inner_linecounts_right .'</td>'. "\n".
+              '<td><div class="scroll">'. $inner_contents_right .'</div></td>'. "\n".
+            '</tr>' ."\n".
+            '</table>' ."\n";
+
+        return Pluf_Template::markSafe($out);
     }
 }

src/IDF/EmailAddress.php

@@ -0,0 +1,96 @@
+<?php
+/* -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- */
+/*
+# ***** BEGIN LICENSE BLOCK *****
+# This file is part of InDefero, an open source project management application.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
+#
+# InDefero is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# InDefero is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+#
+# ***** END LICENSE BLOCK ***** */
+
+/**
+ * Storage of Email addresses
+ *
+ */
+class IDF_EmailAddress extends Pluf_Model
+{
+    public $_model = __CLASS__;
+
+    function init()
+    {
+        $this->_a['table'] = 'idf_emailaddresses';
+        $this->_a['model'] = __CLASS__;
+        $this->_a['cols'] = array(
+                             // It is mandatory to have an "id" column.
+                            'id' =>
+                            array(
+                                  'type' => 'Pluf_DB_Field_Sequence',
+                                  //It is automatically added.
+                                  'blank' => true,
+                                  ),
+                            'user' =>
+                            array(
+                                  'type' => 'Pluf_DB_Field_Foreignkey',
+                                  'model' => 'Pluf_User',
+                                  'blank' => false,
+                                  'verbose' => __('user'),
+                                  ),
+                            'address' =>
+                            array(
+                                  'type' => 'Pluf_DB_Field_Email',
+                                  'blank' => false,
+                                  'verbose' => __('email'),
+                                  'unique' => true,
+                                  ),
+                            );
+        // WARNING: Not using getSqlTable on the Pluf_User object to
+        // avoid recursion.
+        $t_users = $this->_con->pfx.'users';
+        $this->_a['views'] = array(
+                              'join_user' =>
+                              array(
+                                    'join' => 'LEFT JOIN '.$t_users
+                                    .' ON '.$t_users.'.id='.$this->_con->qn('user'),
+                                    'select' => $this->getSelect().', '
+                                    .$t_users.'.login AS login',
+                                    'props' => array('login' => 'login'),
+                                    )
+                                   );
+    }
+
+    function get_email_addresses_for_user($user)
+    {
+        $addr = $user->get_idf_emailaddress_list();
+        $addr[] = (object)array("address" => $user->email, "id" => -1, "user" => $user);
+        return $addr;
+    }
+
+    function get_user_for_email_address($email)
+    {
+        $sql = new Pluf_SQL('email=%s', array($email));
+        $users = Pluf::factory('Pluf_User')->getList(array('filter'=>$sql->gen()));
+        if ($users->count() > 0) {
+            return $users[0];
+        }
+        $sql = new Pluf_SQL('address=%s', array($email));
+        $matches = Pluf::factory('IDF_EmailAddress')->getList(array('filter'=>$sql->gen()));
+        if ($matches->count() > 0) {
+            return new Pluf_User($matches[0]->user);
+        }
+        return null;
+    }
+}
+

src/IDF/FileUtil.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2010 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -65,9 +65,9 @@ class IDF_FileUtil
         }
         $table = array();
         $i = 1;
-        foreach (preg_split("/\015\012|\015|\012/", $content) as $line) {
+        foreach (self::splitIntoLines($content) as $line) {
             $table[] = '<tr class="c-line"><td class="code-lc" id="L'.$i.'"><a href="#L'.$i.'">'.$i.'</a></td>'
-                .'<td class="code mono'.$pretty.'">'.IDF_Diff::padLine(Pluf_esc($line)).'</td></tr>';
+                .'<td class="code mono'.$pretty.'">'.self::emphasizeControlCharacters(Pluf_esc($line)).'</td></tr>';
             $i++;
         }
         return Pluf_Template::markSafe(implode("\n", $table));
@@ -143,6 +143,56 @@ class IDF_FileUtil
         return $res;
     }
 
+    /**
+     * Splits a string into separate lines while retaining the individual
+     * line ending character for every line.
+     *
+     * OS9 line endings are not supported.
+     *
+     * @param string content
+     * @param boolean if true, skip completely empty lines
+     * @return string
+     */
+    public static function splitIntoLines($content, $skipEmpty = false)
+    {
+        $flags = PREG_SPLIT_OFFSET_CAPTURE;
+        if ($skipEmpty) $flags |= PREG_SPLIT_NO_EMPTY;
+        $splitted = preg_split("/\r\n|\n/", $content, -1, $flags);
+
+        $last_off = -1;
+        $lines = array();
+        while (($split = array_shift($splitted)) !== null) {
+            if ($last_off != -1) {
+                $lines[] .= substr($content, $last_off, $split[1] - $last_off);
+            }
+            $last_off = $split[1];
+        }
+        $lines[] = substr($content, $last_off);
+        return $lines;
+    }
+
+    /**
+     * This translates most of the C0 ASCII control characters into
+     * their visual counterparts in the 0x24## unicode plane
+     * (http://en.wikipedia.org/wiki/C0_and_C1_control_codes).
+     *
+     * We could add DEL (0x7F) to this set, but unfortunately this
+     * is not nicely mapped to 0x247F in the control plane, but 0x2421
+     * and adding an if expression below just for this is a little bit
+     * of a hassle. And of course, the more esoteric ones from C1 are
+     * missing as well...
+     *
+     * @param string $content
+     * @return string
+     */
+    public static function emphasizeControlCharacters($content)
+    {
+        return preg_replace(
+            '/([\x00-\x1F])/ue',
+            '"<span class=\"ctrl-char\" title=\"0x".bin2hex("\\1")."\">&#x24".bin2hex("\\1")."</span>"',
+            $content);
+    }
+
     /**
      * Find if a given mime type is a text file.
      * This uses the output of the self::getMimeType function.

src/IDF/Form/Admin/ProjectCreate.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -182,7 +182,7 @@ class IDF_Form_Admin_ProjectCreate extends Pluf_Form
         // we accept only starting with http(s):// to avoid people
         // trying to access the local filesystem.
         if (!preg_match('#^(http|https)://#', $url)) {
-            throw new Pluf_Form_Invalid(__('Only a remote repository available throught http or https are allowed. For example "http://somewhere.com/svn/trunk".'));
+            throw new Pluf_Form_Invalid(__('Only a remote repository available through HTTP or HTTPS is allowed. For example "http://somewhere.com/svn/trunk".'));
         }
         return $url;
     }
@@ -319,6 +319,7 @@ class IDF_Form_Admin_ProjectCreate extends Pluf_Form
                            'labels_issue_closed' => IDF_Form_IssueTrackingConf::init_closed,
                            'labels_issue_predefined' =>  IDF_Form_IssueTrackingConf::init_predefined,
                            'labels_issue_one_max' => IDF_Form_IssueTrackingConf::init_one_max,
+                           'issue_relations' => IDF_Form_IssueTrackingConf::init_relations,
                            'webhook_url' => '',
                            'downloads_access_rights' => 'all',
                            'review_access_rights' => 'all',

src/IDF/Form/Admin/ProjectDelete.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/Admin/ProjectUpdate.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -88,7 +88,7 @@ class IDF_Form_Admin_ProjectUpdate extends Pluf_Form
                         $mtn_master_branch)) {
             throw new Pluf_Form_Invalid(__(
                 'The master branch is empty or contains illegal characters, '.
-                'please use only letters, digits, dashs and dots as separators.'
+                'please use only letters, digits, dashes and dots as separators.'
             ));
         }
 

src/IDF/Form/Admin/UserCreate.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -68,7 +68,7 @@ class IDF_Form_Admin_UserCreate extends Pluf_Form
                                       array('required' => true,
                                             'label' => __('Email'),
                                             'initial' => '',
-                                            'help_text' => __('Double check the email address as the password is directly sent to the user.'),
+                                            'help_text' => __('Double check the email address as the password is sent directly to the user.'),
                                             ));
 
         $this->fields['language'] = new Pluf_Form_Field_Varchar(

src/IDF/Form/Admin/UserUpdate.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -78,7 +78,7 @@ class IDF_Form_Admin_UserUpdate extends Pluf_Form
                                             'label' => __('Password'),
                                             'initial' => '',
                                             'widget' => 'Pluf_Form_Widget_PasswordInput',
-                                            'help_text' => Pluf_Template::markSafe(__('Leave blank if you do not want to change the password.').'<br />'.__('The password must be hard for other people to find it, but easy for the user to remember.')),
+                                            'help_text' => Pluf_Template::markSafe(__('Leave blank if you do not want to change the password.').'<br />'.__('The password must be hard for other people to guess, but easy for the user to remember.')),
                                             'widget_attrs' => array(
                                                        'maxlength' => 50,
                                                        'size' => 15,
@@ -161,7 +161,7 @@ class IDF_Form_Admin_UserUpdate extends Pluf_Form
                           'label' => __('Staff'),
                           'initial' => $this->user->staff,
                           'widget' => 'Pluf_Form_Widget_CheckboxInput',
-                          'help_text' => __('If you give staff rights to a user, you really need to trust him.'),
+                          'help_text' => __('If you give staff rights to a user, you really need to trust them.'),
                           ));
         }
 
@@ -173,7 +173,7 @@ class IDF_Form_Admin_UserUpdate extends Pluf_Form
                           'initial' => $this->user->active,
                           'widget' => 'Pluf_Form_Widget_CheckboxInput',
                           'widget_attrs' => $attrs,
-                          'help_text' => __('If the user is not getting the confirmation email or is abusing the system, you can directly enable or disable his account here.'),
+                          'help_text' => __('If the user is not getting the confirmation email or is abusing the system, you can directly enable or disable their account here.'),
                           ));
     }
 

src/IDF/Form/Field/EmailList.php

@@ -3,19 +3,19 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2010 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
-# Plume Framework is free software; you can redistribute it and/or modify
-# it under the terms of the GNU Lesser General Public License as published by
-# the Free Software Foundation; either version 2.1 of the License, or
+# InDefero is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
 # (at your option) any later version.
 #
-# Plume Framework is distributed in the hope that it will be useful,
+# InDefero is distributed in the hope that it will be useful,
 # but WITHOUT ANY WARRANTY; without even the implied warranty of
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU Lesser General Public License for more details.
+# GNU General Public License for more details.
 #
-# You should have received a copy of the GNU Lesser General Public License
+# You should have received a copy of the GNU General Public License
 # along with this program; if not, write to the Free Software
 # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
 #

src/IDF/Form/IssueCreate.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -36,6 +36,7 @@ class IDF_Form_IssueCreate extends Pluf_Form
     public $user = null;
     public $project = null;
     public $show_full = false;
+    public $relation_types = null;
 
     public function initFields($extra=array())
     {
@@ -45,9 +46,12 @@ class IDF_Form_IssueCreate extends Pluf_Form
             or $this->user->hasPerm('IDF.project-member', $this->project)) {
             $this->show_full = true;
         }
+        $this->relation_types = $this->project->getRelationsFromConfig();
+
         $contentTemplate = $this->project->getConf()->getVal(
             'labels_issue_template', IDF_Form_IssueTrackingConf::init_template
         );
+
         $this->fields['summary'] = new Pluf_Form_Field_Varchar(
                                       array('required' => true,
                                             'label' => __('Summary'),
@@ -109,6 +113,20 @@ class IDF_Form_IssueCreate extends Pluf_Form
                                                                     ),
                                             ));
 
+            $this->fields['relation_type0'] = new Pluf_Form_Field_Varchar(
+                          array('required' => false,
+                                'label' => __('This issue'),
+                                'initial' => current($this->relation_types),
+                                'widget_attrs' => array('size' => 15),
+                                ));
+
+            $this->fields['relation_issue0'] = new Pluf_Form_Field_Varchar(
+                          array('required' => false,
+                                'label' => null,
+                                'initial' => '',
+                                'widget_attrs' => array('size' => 10),
+                                ));
+
             /*
              * get predefined tags for issues from current project
              *
@@ -235,6 +253,63 @@ class IDF_Form_IssueCreate extends Pluf_Form
         return $this->cleaned_data['status'];
     }
 
+    // this method is not called from Pluf_Form directly, but shared for
+    // among all similar fields
+    function clean_relation_type($value)
+    {
+        $relation_type = trim($value);
+        if (empty($relation_type))
+            return '';
+
+        $found = false;
+        foreach ($this->relation_types as $type) {
+            if ($type == $relation_type) {
+                $found = true;
+                break;
+            }
+        }
+        if (!$found) {
+            throw new Pluf_Form_Invalid(__('You provided an invalid relation type.'));
+        }
+        return $relation_type;
+    }
+
+    function clean_relation_type0()
+    {
+        return $this->clean_relation_type($this->cleaned_data['relation_type0']);
+    }
+
+    // this method is not called from Pluf_Form directly, but shared for
+    // among all similar fields
+    function clean_relation_issue($value)
+    {
+        $issues = trim($value);
+        if (empty($issues))
+            return '';
+
+        $issue_ids = preg_split('/\s*,\s*/', $issues, -1, PREG_SPLIT_NO_EMPTY);
+        foreach ($issue_ids as $issue_id) {
+            if (!ctype_digit($issue_id) || (int)$issue_id < 1) {
+                throw new Pluf_Form_Invalid(sprintf(
+                    __('The value "%s" is not a valid issue id.'), $issue_id
+                ));
+            }
+            $issue = new IDF_Issue($issue_id);
+            if ($issue->id != $issue_id || $issue->project != $this->project->id) {
+                throw new Pluf_Form_Invalid(sprintf(
+                    __('The issue "%s" does not exist.'), $issue_id
+                ));
+            }
+        }
+
+        return implode(', ', $issue_ids);
+    }
+
+    function clean_relation_issue0()
+    {
+        return $this->clean_relation_issue($this->cleaned_data['relation_issue0']);
+    }
+
     /**
      * Clean the attachments post failure.
      */
@@ -298,6 +373,30 @@ class IDF_Form_IssueCreate extends Pluf_Form
         foreach ($tags as $tag) {
             $issue->setAssoc($tag);
         }
+        // add relations (if any)
+        if (!empty($this->cleaned_data['relation_type0'])) {
+            $verb = $this->cleaned_data['relation_type0'];
+            $other_verb = $this->relation_types[$verb];
+            $related_issues = preg_split('/\s*,\s*/', $this->cleaned_data['relation_issue0'], -1, PREG_SPLIT_NO_EMPTY);
+
+            foreach ($related_issues as $related_issue_id) {
+                $related_issue = new IDF_Issue($related_issue_id);
+                $rel = new IDF_IssueRelation();
+                $rel->issue = $issue;
+                $rel->verb = $verb;
+                $rel->other_issue = $related_issue;
+                $rel->submitter = $this->user;
+                $rel->create();
+
+                $other_rel = new IDF_IssueRelation();
+                $other_rel->issue = $related_issue;
+                $other_rel->verb = $other_verb;
+                $other_rel->other_issue = $issue;
+                $other_rel->submitter = $this->user;
+                $other_rel->create();
+            }
+        }
+
         // add the first comment
         $comment = new IDF_IssueComment();
         $comment->issue = $issue;

src/IDF/Form/IssueTrackingConf.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -72,6 +72,23 @@ Performance          = Performance issue
 Usability            = Affects program usability
 Maintainability      = Hinders future changes';
     const init_one_max = 'Type, Priority, Milestone';
+    // ATTENTION: if you change something here, change the values below as well!
+    const init_relations = 'is related to
+blocks, is blocked by
+duplicates, is duplicated by';
+
+    // These are actually all noop's, but we have no other chance to
+    // tell IDF's translation mechanism to mark the strings as translatable
+    // FIXME: IDF should get a internal translation system for strings like
+    // that, that can also be easily expanded by users
+    private function noop()
+    {
+        __('is related to');
+        __('blocks');
+        __('is blocked by');
+        __('duplicates');
+        __('is duplicated by');
+    }
 
     public function initFields($extra=array())
     {
@@ -118,6 +135,15 @@ Maintainability      = Hinders future changes';
                                             'widget_attrs' => array('size' => 60),
                                             ));
 
+        $this->fields['issue_relations'] = new Pluf_Form_Field_Varchar(
+                                      array('required' => true,
+                                            'label' => __('Issue relations'),
+                                            'initial' => self::init_relations,
+                                            'help_text' => __('You can define bidirectional relations like "is related to" or "blocks, is blocked by".'),
+                                            'widget_attrs' => array('rows' => 7,
+                                                                    'cols' => 75),
+                                            'widget' => 'Pluf_Form_Widget_TextareaInput',
+                                            ));
     }
 }
 

src/IDF/Form/IssueUpdate.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -39,6 +39,7 @@ class IDF_Form_IssueUpdate  extends IDF_Form_IssueCreate
             or $this->user->hasPerm('IDF.project-member', $this->project)) {
             $this->show_full = true;
         }
+        $this->relation_types = $this->project->getRelationsFromConfig();
         if ($this->show_full) {
             $this->fields['summary'] = new Pluf_Form_Field_Varchar(
                                       array('required' => true,
@@ -102,6 +103,52 @@ class IDF_Form_IssueUpdate  extends IDF_Form_IssueCreate
                                                        'size' => 15,
                                                                     ),
                                             ));
+
+            $idx = 0;
+            // note: clean_relation_type0 and clean_relation_issue0 already
+            //       exist in the base class
+            $this->fields['relation_type'.$idx] = new Pluf_Form_Field_Varchar(
+                          array('required' => false,
+                                'label' => __('This issue'),
+                                'initial' => current($this->relation_types),
+                                'widget_attrs' => array('size' => 15),
+                                ));
+
+            $this->fields['relation_issue'.$idx] = new Pluf_Form_Field_Varchar(
+                          array('required' => false,
+                                'label' => null,
+                                'initial' => '',
+                                'widget_attrs' => array('size' => 10),
+                                ));
+
+            ++$idx;
+            $relatedIssues = $this->issue->getGroupedRelatedIssues(array(), true);
+            foreach ($relatedIssues as $verb => $ids) {
+                $this->fields['relation_type'.$idx] = new Pluf_Form_Field_Varchar(
+                          array('required' => false,
+                                'label' => __('This issue'),
+                                'initial' => $verb,
+                                'widget_attrs' => array('size' => 15),
+                                ));
+                $m = 'clean_relation_type'.$idx;
+                $this->$m = create_function('$form', '
+                    return $form->clean_relation_type($form->cleaned_data["relation_type'.$idx.'"]);
+                ');
+
+                $this->fields['relation_issue'.$idx] = new Pluf_Form_Field_Varchar(
+                              array('required' => false,
+                                    'label' => null,
+                                    'initial' => implode(', ', $ids),
+                                    'widget_attrs' => array('size' => 10),
+                                    ));
+                $m = 'clean_relation_issue'.$idx;
+                $this->$m = create_function('$form', '
+                    return $form->clean_relation_issue($form->cleaned_data["relation_issue'.$idx.'"]);
+                ');
+
+                ++$idx;
+            }
+
             $tags = $this->issue->get_tags_list();
             for ($i=1;$i<7;$i++) {
                 $initial = '';
@@ -155,6 +202,51 @@ class IDF_Form_IssueUpdate  extends IDF_Form_IssueCreate
     public function clean()
     {
         $this->cleaned_data = parent::clean();
+
+        // normalize the user's input by removing dublettes and by combining
+        // ids from identical verbs in different input fields into one array
+        $normRelatedIssues = array();
+        for ($idx = 0; isset($this->cleaned_data['relation_type'.$idx]); ++$idx) {
+            $verb = $this->cleaned_data['relation_type'.$idx];
+            if (empty($verb))
+                continue;
+
+            $ids = preg_split('/\s*,\s*/', $this->cleaned_data['relation_issue'.$idx],
+                              -1, PREG_SPLIT_NO_EMPTY);
+            if (count($ids) == 0)
+                continue;
+
+            if (!array_key_exists($verb, $normRelatedIssues))
+                $normRelatedIssues[$verb] = array();
+            foreach ($ids as $id) {
+                if (!in_array($id, $normRelatedIssues[$verb]))
+                    $normRelatedIssues[$verb][] = $id;
+            }
+        }
+
+        // now look at any added / removed ids
+        $added = $removed = array();
+        $relatedIssues = $this->issue->getGroupedRelatedIssues(array(), true);
+        $added = array_diff_key($normRelatedIssues, $relatedIssues);
+        $removed = array_diff_key($relatedIssues, $normRelatedIssues);
+
+        $keysToLookAt = array_keys(
+            array_intersect_key($relatedIssues, $normRelatedIssues)
+        );
+        foreach ($keysToLookAt as $key) {
+            $a = array_diff($normRelatedIssues[$key], $relatedIssues[$key]);
+            if (count($a) > 0)
+                $added[$key] = $a;
+            $r = array_diff($relatedIssues[$key], $normRelatedIssues[$key]);
+            if (count($r) > 0)
+                $removed[$key] = $r;
+        }
+
+        // cache the added / removed data, so we do not have to
+        // calculate that again
+        $this->cleaned_data['_added_issue_relations'] = $added;
+        $this->cleaned_data['_removed_issue_relations'] = $removed;
+
         // As soon as we know that at least one change was done, we
         // return the cleaned data and do not go further.
         if (strlen(trim($this->cleaned_data['content']))) {
@@ -214,6 +306,11 @@ class IDF_Form_IssueUpdate  extends IDF_Form_IssueCreate
                     return $this->cleaned_data;
                 }
             }
+
+            if (count($this->cleaned_data['_added_issue_relations']) != 0 ||
+                count($this->cleaned_data['_removed_issue_relations']) != 0) {
+                return $this->cleaned_data;
+            }
         }
         // no changes!
         throw new Pluf_Form_Invalid(__('No changes were entered.'));
@@ -255,20 +352,22 @@ class IDF_Form_IssueUpdate  extends IDF_Form_IssueCreate
             foreach ($tags as $tag) {
                 if (!Pluf_Model_InArray($tag, $oldtags)) {
                     if (!isset($changes['lb'])) $changes['lb'] = array();
+                    if (!isset($changes['lb']['add'])) $changes['lb']['add'] = array();
                     if ($tag->class != 'Other') {
-                        $changes['lb'][] = (string) $tag; //new tag
+                        $changes['lb']['add'][] = (string) $tag; //new tag
                     } else {
-                        $changes['lb'][] = (string) $tag->name;
+                        $changes['lb']['add'][] = (string) $tag->name;
                     }
                 }
             }
             foreach ($oldtags as $tag) {
                 if (!Pluf_Model_InArray($tag, $tags)) {
                     if (!isset($changes['lb'])) $changes['lb'] = array();
+                    if (!isset($changes['lb']['rem'])) $changes['lb']['rem'] = array();
                     if ($tag->class != 'Other') {
-                        $changes['lb'][] = '-'.(string) $tag; //new tag
+                        $changes['lb']['rem'][] = (string) $tag; //new tag
                     } else {
-                        $changes['lb'][] = '-'.(string) $tag->name;
+                        $changes['lb']['rem'][] = (string) $tag->name;
                     }
                 }
             }
@@ -286,6 +385,47 @@ class IDF_Form_IssueUpdate  extends IDF_Form_IssueCreate
                 or ((!is_null($owner) and !is_null($this->issue->get_owner())) and $owner->id != $this->issue->get_owner()->id)) {
                 $changes['ow'] = (is_null($owner)) ? '---' : $owner->login;
             }
+            // Issue relations - additions
+            foreach ($this->cleaned_data['_added_issue_relations'] as $verb => $ids) {
+                $other_verb = $this->relation_types[$verb];
+                foreach ($ids as $id) {
+                    $related_issue = new IDF_Issue($id);
+                    $rel = new IDF_IssueRelation();
+                    $rel->issue = $this->issue;
+                    $rel->verb = $verb;
+                    $rel->other_issue = $related_issue;
+                    $rel->submitter = $this->user;
+                    $rel->create();
+
+                    $other_rel = new IDF_IssueRelation();
+                    $other_rel->issue = $related_issue;
+                    $other_rel->verb = $other_verb;
+                    $other_rel->other_issue = $this->issue;
+                    $other_rel->submitter = $this->user;
+                    $other_rel->create();
+                }
+                if (!isset($changes['rel'])) $changes['rel'] = array();
+                if (!isset($changes['rel']['add'])) $changes['rel']['add'] = array();
+                $changes['rel']['add'][] = $verb.' '.implode(', ', $ids);
+            }
+            // Issue relations - removals
+            foreach ($this->cleaned_data['_removed_issue_relations'] as $verb => $ids) {
+                foreach ($ids as $id) {
+                    $db = &Pluf::db();
+                    $table = Pluf::factory('IDF_IssueRelation')->getSqlTable();
+                    $sql = new Pluf_SQL('verb=%s AND (
+                                        (issue=%s AND other_issue=%s) OR
+                                        (other_issue=%s AND issue=%s))',
+                                        array($verb,
+                                              $this->issue->id, $id,
+                                              $this->issue->id, $id));
+                    $db->execute('DELETE FROM '.$table.' WHERE '.$sql->gen());
+                }
+
+                if (!isset($changes['rel'])) $changes['rel'] = array();
+                if (!isset($changes['rel']['rem'])) $changes['rel']['rem'] = array();
+                $changes['rel']['rem'][] = $verb.' '.implode(', ', $ids);
+            }
             // Update the issue
             $this->issue->batchAssoc('IDF_Tag', $tagids);
             $this->issue->summary = trim($this->cleaned_data['summary']);

src/IDF/Form/MembersConf.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/Password.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -86,7 +86,7 @@ class IDF_Form_Password extends Pluf_Form
                 $return_url = Pluf_HTTP_URL_urlForView('IDF_Views::passwordRecoveryInputCode');
                 $tmpl = new Pluf_Template('idf/user/passrecovery-email.txt');
                 $cr = new Pluf_Crypt(md5(Pluf::f('secret_key')));
-                $code = trim($cr->encrypt($user->email.':'.$user->id.':'.time()), 
+                $code = trim($cr->encrypt($user->email.':'.$user->id.':'.time().':primary'), 
                              '~');
                 $code = substr(md5(Pluf::f('secret_key').$code), 0, 2).$code;
                 $url = Pluf::f('url_base').Pluf_HTTP_URL_urlForView('IDF_Views::passwordRecovery', array($code), array(), false);

src/IDF/Form/PasswordInputKey.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/PasswordReset.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/ProjectConf.php

@@ -0,0 +1,140 @@
+<?php
+/* -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- */
+/*
+# ***** BEGIN LICENSE BLOCK *****
+# This file is part of InDefero, an open source project management application.
+# Copyright(C) 2008-2011 Céondo Ltd and contributors.
+#
+# InDefero is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+#(at your option) any later version.
+#
+# InDefero is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+#
+# ***** END LICENSE BLOCK ***** */
+
+
+/**
+ * Configuration of the project.
+ */
+class IDF_Form_ProjectConf extends Pluf_Form
+{
+    public $project = null;
+
+    public function initFields($extra=array())
+    {
+        $this->project = $extra['project'];
+
+        // Basic part
+        $this->fields['name'] = new Pluf_Form_Field_Varchar(array('required' => true,
+                                                                  'label' => __('Name'),
+                                                                  'initial' => $this->project->name,
+                                                                 ));
+        $this->fields['shortdesc'] = new Pluf_Form_Field_Varchar(array('required' => true,
+                                                                       'label' => __('Short Description'),
+                                                                       'initial' => $this->project->shortdesc,
+                                                                       'widget_attrs' => array('size' => '68'),
+                                                                      ));
+        $this->fields['description'] = new Pluf_Form_Field_Varchar(array('required' => true,
+                                                                         'label' => __('Description'),
+                                                                         'initial' => $this->project->description,
+                                                                         'widget_attrs' => array('cols' => 68,
+                                                                                                 'rows' => 26,
+                                                                                                ),
+                                                                         'widget' => 'Pluf_Form_Widget_TextareaInput',
+                                                                        ));
+
+        // Logo part
+        $upload_path = Pluf::f('upload_path', false);
+        if (false === $upload_path) {
+            throw new Pluf_Exception_SettingError(__('The "upload_path" configuration variable was not set.'));
+        }
+        $upload_path .= '/' . $this->project->shortname;
+        $filename = '/%s';
+        $this->fields['logo'] = new Pluf_Form_Field_File(array('required' => false,
+                                                         'label' => __('Update the logo'),
+                                                         'initial' => '',
+                                                         'help_text' => __('The logo must be a picture with a size of 32 by 32.'),
+                                                         'max_size' => Pluf::f('max_upload_size', 5 * 1024),
+                                                         'move_function_params' =>
+                                                         array('upload_path' => $upload_path,
+                                                               'upload_path_create' => true,
+                                                               'file_name' => $filename,
+                                                               )
+                                                         ));
+
+        $this->fields['logo_remove'] = new Pluf_Form_Field_Boolean(array('required' => false,
+                                                                         'label' => __('Remove the current logo'),
+                                                                         'initial' => false,
+                                                                         'widget' => 'Pluf_Form_Widget_CheckboxInput',
+                                                                         ));
+    }
+
+    /**
+     * If we have uploaded a file, but the form failed remove it.
+     *
+     */
+    function failed()
+    {
+        if (!empty($this->cleaned_data['logo'])
+            && file_exists(Pluf::f('upload_path').'/'.$this->cleaned_data['logo'])) {
+            unlink(Pluf::f('upload_path').'/'.$this->cleaned_data['logo']);
+        }
+    }
+
+    public function clean()
+    {
+        if (!isset($this->cleaned_data['logo_remove'])) {
+            $this->cleaned_data['logo_remove'] = false;
+        }
+
+        return $this->cleaned_data;
+    }
+
+    public function clean_logo()
+    {
+        if (empty($this->cleaned_data['logo'])) {
+            return '';
+        }
+
+        $meta = getimagesize(Pluf::f('upload_path') . '/' . $this->project->shortname . $this->cleaned_data['logo']);
+
+        if ($meta === false) {
+            throw new Pluf_Form_Invalid(__('Could not determine the size of the uploaded picture.'));
+        }
+
+        if ($meta[0] !== 32 || $meta[1] !== 32) {
+            throw new Pluf_Form_Invalid(__('The picture must have a size of 32 by 32.'));
+        }
+
+        return $this->cleaned_data['logo'];
+    }
+
+    public function save($commit=true)
+    {
+        $conf = $this->project->getConf();
+
+        // Basic part
+        $this->project->name = $this->cleaned_data['name'];
+        $this->project->shortdesc = $this->cleaned_data['shortdesc'];
+        $this->project->description = $this->cleaned_data['description'];
+        $this->project->update();
+
+        // Logo part
+        if ($this->cleaned_data['logo'] !== "") {
+            $conf->setVal('logo', $this->cleaned_data['logo']);
+        }
+        if ($this->cleaned_data['logo_remove'] === true) {
+            @unlink(Pluf::f('upload_path') . '/' . $this->project->shortname . $conf->getVal('logo'));
+            $conf->delVal('logo');
+        }
+    }
+}

src/IDF/Form/Register.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -42,7 +42,7 @@ class IDF_Form_Register extends Pluf_Form
                                             'max_length' => 15,
                                             'min_length' => 3,
                                             'initial' => $login,
-                                            'help_text' => __('The login must be between 3 and 15 characters long and contains only letters and digits.'),
+                                            'help_text' => __('The login must be between 3 and 15 characters long and contain only letters and digits.'),
                                             'widget_attrs' => array(
                                                        'maxlength' => 15,
                                                        'size' => 10,
@@ -52,7 +52,7 @@ class IDF_Form_Register extends Pluf_Form
                                       array('required' => true,
                                             'label' => __('Your email'),
                                             'initial' => '',
-                                            'help_text' => __('We will never send you any unsolicited emails. We hate spams too!'),
+                                            'help_text' => __('We will never send you any unsolicited emails. We hate spam too!'),
                                             ));
 
         $this->fields['terms'] = new Pluf_Form_Field_Boolean(
@@ -93,10 +93,8 @@ class IDF_Form_Register extends Pluf_Form
     function clean_email()
     {
         $this->cleaned_data['email'] = mb_strtolower(trim($this->cleaned_data['email']));
-        $guser = new Pluf_User();
-        $sql = new Pluf_SQL('email=%s', $this->cleaned_data['email']);
-        if ($guser->getCount(array('filter' => $sql->gen())) > 0) {
-            throw new Pluf_Form_Invalid(sprintf(__('The email "%s" is already used. If you need, click on the help link to recover your password.'), $this->cleaned_data['email']));
+        if (Pluf::factory('IDF_EmailAddress')->get_user_for_email_address($this->cleaned_data['email']) != null) {
+            throw new Pluf_Form_Invalid(sprintf(__('The email "%s" is already used. If you need to, click on the help link to recover your password.'), $this->cleaned_data['email']));
         }
         return $this->cleaned_data['email'];
     }

src/IDF/Form/RegisterConfirmation.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -69,7 +69,7 @@ class IDF_Form_RegisterConfirmation extends Pluf_Form
                                             'label' => __('Your password'),
                                             'initial' => '',
                                             'widget' => 'Pluf_Form_Widget_PasswordInput',
-                                            'help_text' => __('Your password must be hard for other people to find it, but easy for you to remember.'),
+                                            'help_text' => __('Your password must be hard for other people to guess, but easy for you to remember.'),
                                             'widget_attrs' => array(
                                                        'maxlength' => 50,
                                                        'size' => 15,

src/IDF/Form/RegisterInputKey.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/ReviewCreate.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/ReviewFileComment.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -64,6 +64,8 @@ class IDF_Form_ReviewFileComment extends Pluf_Form
         if ($this->user->hasPerm('IDF.project-owner', $this->project)
             or $this->user->hasPerm('IDF.project-member', $this->project)) {
             $this->show_full = true;
+        } else {
+            $this->show_full = false;
         }
         if ($this->show_full) {
             $this->fields['summary'] = new Pluf_Form_Field_Varchar(

src/IDF/Form/SourceConf.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/TabsConf.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/UpdateUpload.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/Upload.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -83,7 +83,7 @@ class IDF_Form_Upload extends Pluf_Form
         if (strlen($extra)) $extra .= '|';
         if (!preg_match('/\.('.$extra.'png|jpg|jpeg|gif|bmp|psd|tif|aiff|asf|avi|bz2|css|doc|eps|gz|jar|mdtext|mid|mov|mp3|mpg|ogg|pdf|ppt|ps|qt|ra|ram|rm|rtf|sdd|sdw|sit|sxi|sxw|swf|tgz|txt|wav|xls|xml|war|wmv|zip)$/i', $this->cleaned_data['file'])) {
             @unlink(Pluf::f('upload_path').'/'.$this->project->shortname.'/files/'.$this->cleaned_data['file']);
-            throw new Pluf_Form_Invalid(__('For security reason, you cannot upload a file with this extension.'));
+            throw new Pluf_Form_Invalid(__('For security reasons, you cannot upload a file with this extension.'));
         }
         return $this->cleaned_data['file'];
     }

src/IDF/Form/UploadConf.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/UserAccount.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -79,6 +79,7 @@ class IDF_Form_UserAccount  extends Pluf_Form
                                             'widget' => 'Pluf_Form_Widget_PasswordInput',
                                             'help_text' => Pluf_Template::markSafe(__('Leave blank if you do not want to change your password.').'<br />'.__('Your password must be hard for other people to find it, but easy for you to remember.')),
                                             'widget_attrs' => array(
+                                                       'autocomplete' => 'off',
                                                        'maxlength' => 50,
                                                        'size' => 15,
                                                                     ),
@@ -89,6 +90,7 @@ class IDF_Form_UserAccount  extends Pluf_Form
                                             'initial' => '',
                                             'widget' => 'Pluf_Form_Widget_PasswordInput',
                                             'widget_attrs' => array(
+                                                       'autocomplete' => 'off',
                                                        'maxlength' => 50,
                                                        'size' => 15,
                                                                     ),
@@ -161,8 +163,44 @@ class IDF_Form_UserAccount  extends Pluf_Form
                                             'widget_attrs' => array('rows' => 3,
                                                                     'cols' => 40),
                                             'widget' => 'Pluf_Form_Widget_TextareaInput',
-                                            'help_text' => __('Paste a SSH or monotone public key. Be careful to not provide your private key here!')
+                                            'help_text' => __('Paste an SSH or monotone public key. Be careful to not provide your private key here!')
                                             ));
+
+        $this->fields['secondary_mail'] = new Pluf_Form_Field_Email(
+                                      array('required' => false,
+                                            'label' => __('Add a secondary mail address'),
+                                            'initial' => '',
+                                            'help_text' => __('You will get a mail to confirm that you own the address you specify.'),
+                                            ));
+    }
+
+    private function send_validation_mail($new_email, $secondary_mail=false)
+    {
+        if ($secondary_mail) {
+            $type = "secondary";
+        } else {
+            $type = "primary";
+        }
+        $cr = new Pluf_Crypt(md5(Pluf::f('secret_key')));
+        $encrypted = trim($cr->encrypt($new_email.':'.$this->user->id.':'.time().':'.$type), '~');
+        $key = substr(md5(Pluf::f('secret_key').$encrypted), 0, 2).$encrypted;
+        $url = Pluf::f('url_base').Pluf_HTTP_URL_urlForView('IDF_Views_User::changeEmailDo', array($key), array(), false);
+        $urlik = Pluf::f('url_base').Pluf_HTTP_URL_urlForView('IDF_Views_User::changeEmailInputKey', array(), array(), false);
+        $context = new Pluf_Template_Context(
+             array('key' => Pluf_Template::markSafe($key),
+                   'url' => Pluf_Template::markSafe($url),
+                   'urlik' => Pluf_Template::markSafe($urlik),
+                   'email' => $new_email,
+                   'user'=> $this->user,
+                   )
+        );
+        $tmpl = new Pluf_Template('idf/user/changeemail-email.txt');
+        $text_email = $tmpl->render($context);
+        $email = new Pluf_Mail(Pluf::f('from_email'), $new_email,
+                               __('Confirm your new email address.'));
+        $email->addTextMessage($text_email);
+        $email->sendMail();
+        $this->user->setMessage(sprintf(__('A validation email has been sent to "%s" to validate the email address change.'), Pluf_esc($new_email)));
     }
 
     /**
@@ -188,26 +226,7 @@ class IDF_Form_UserAccount  extends Pluf_Form
         $new_email = $this->cleaned_data['email'];
         unset($this->cleaned_data['email']);
         if ($old_email != $new_email) {
-            $cr = new Pluf_Crypt(md5(Pluf::f('secret_key')));
-            $encrypted = trim($cr->encrypt($new_email.':'.$this->user->id.':'.time()), '~');
-            $key = substr(md5(Pluf::f('secret_key').$encrypted), 0, 2).$encrypted;
-            $url = Pluf::f('url_base').Pluf_HTTP_URL_urlForView('IDF_Views_User::changeEmailDo', array($key), array(), false);
-            $urlik = Pluf::f('url_base').Pluf_HTTP_URL_urlForView('IDF_Views_User::changeEmailInputKey', array(), array(), false);
-            $context = new Pluf_Template_Context(
-                 array('key' => Pluf_Template::markSafe($key),
-                       'url' => Pluf_Template::markSafe($url),
-                       'urlik' => Pluf_Template::markSafe($urlik),
-                       'email' => $new_email,
-                       'user'=> $this->user,
-                       )
-            );
-            $tmpl = new Pluf_Template('idf/user/changeemail-email.txt');
-            $text_email = $tmpl->render($context);
-            $email = new Pluf_Mail(Pluf::f('from_email'), $new_email,
-                                   __('Confirm your new email address.'));
-            $email->addTextMessage($text_email);
-            $email->sendMail();
-            $this->user->setMessage(sprintf(__('A validation email has been sent to "%s" to validate the email address change.'), Pluf_esc($new_email)));
+            $this->send_validation_mail($new_email);
         }
         $this->user->setFromFormData($this->cleaned_data);
         // Add key as needed.
@@ -219,6 +238,9 @@ class IDF_Form_UserAccount  extends Pluf_Form
                 $key->create();
             }
         }
+        if ('' !== $this->cleaned_data['secondary_mail']) {
+            $this->send_validation_mail($this->cleaned_data['secondary_mail'], true);
+        }
 
         if ($commit) {
             $this->user->update();
@@ -295,8 +317,15 @@ class IDF_Form_UserAccount  extends Pluf_Form
             return '';
         }
 
-        if (preg_match('#^ssh\-[a-z]{3}\s\S+(\s\S+)?$#', $key)) {
-            $key = str_replace(array("\n", "\r"), '', $key);
+        $keysearch = '';
+        if (preg_match('#^(ssh\-(?:dss|rsa)\s+\S+)(.*)#', $key, $m)) {
+            $basekey = preg_replace('/\s+/', ' ', $m[1]);
+            $comment = trim(preg_replace('/[\r\n]/', ' ', $m[2]));
+           
+            $keysearch = $basekey.'%';
+            $key = $basekey;
+            if (!empty($comment))
+                $key .= ' '.$comment;
 
             if (Pluf::f('idf_strong_key_check', false)) {
 
@@ -315,7 +344,9 @@ class IDF_Form_UserAccount  extends Pluf_Form
                 }
             }
         }
-        else if (preg_match('#^\[pubkey [^\]]+\]\s*\S+\s*\[end\]$#', $key)) {
+        else if (preg_match('#^\[pubkey [^\]]+\]\s*(\S+)\s*\[end\]$#', $key, $m)) {
+            $keysearch = '%'.$m[1].'%';
+            
             if (Pluf::f('idf_strong_key_check', false)) {
 
                 // if monotone can read it, it should be valid
@@ -337,7 +368,7 @@ class IDF_Form_UserAccount  extends Pluf_Form
         }
         else {
             throw new Pluf_Form_Invalid(
-                __('Public key looks neither like a SSH '.
+                __('Public key looks like neither an SSH '.
                    'nor monotone public key.'));
         }
 
@@ -345,7 +376,7 @@ class IDF_Form_UserAccount  extends Pluf_Form
         if ($user) {
             $ruser = Pluf::factory('Pluf_User', $user);
             if ($ruser->id > 0) {
-                $sql = new Pluf_SQL('content=%s', array($key));
+                $sql = new Pluf_SQL('content LIKE %s AND user=%s', array($keysearch, $ruser->id));
                 $keys = Pluf::factory('IDF_Key')->getList(array('filter' => $sql->gen()));
                 if (count($keys) > 0) {
                     throw new Pluf_Form_Invalid(
@@ -393,15 +424,22 @@ class IDF_Form_UserAccount  extends Pluf_Form
     function clean_email()
     {
         $this->cleaned_data['email'] = mb_strtolower(trim($this->cleaned_data['email']));
-        $guser = new Pluf_User();
-        $sql = new Pluf_SQL('email=%s AND id!=%s',
-                            array($this->cleaned_data['email'], $this->user->id));
-        if ($guser->getCount(array('filter' => $sql->gen())) > 0) {
+        $user = Pluf::factory('IDF_EmailAddress')->get_user_for_email_address($this->cleaned_data['email']);
+        if ($user != null and $user->id != $this->user->id) {
             throw new Pluf_Form_Invalid(sprintf(__('The email "%s" is already used.'), $this->cleaned_data['email']));
         }
         return $this->cleaned_data['email'];
     }
 
+    function clean_secondary_mail()
+    {
+        $this->cleaned_data['secondary_mail'] = mb_strtolower(trim($this->cleaned_data['secondary_mail']));
+        if (Pluf::factory('IDF_EmailAddress')->get_user_for_email_address($this->cleaned_data['secondary_mail']) != null) {
+            throw new Pluf_Form_Invalid(sprintf(__('The email "%s" is already used.'), $this->cleaned_data['secondary_mail']));
+        }
+        return $this->cleaned_data['secondary_mail'];
+    }
+
     function clean_public_key()
     {
         $this->cleaned_data['public_key'] =

src/IDF/Form/UserChangeEmail.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -53,7 +53,7 @@ class IDF_Form_UserChangeEmail extends Pluf_Form
      * Throw a Pluf_Form_Invalid exception if the key is not valid.
      *
      * @param string Key
-     * @return array array($new_email, $user_id, time())
+     * @return array array($new_email, $user_id, time(), [primary|secondary])
      */
     public static function validateKey($key)
     {
@@ -63,7 +63,7 @@ class IDF_Form_UserChangeEmail extends Pluf_Form
             throw new Pluf_Form_Invalid(__('The validation key is not valid. Please copy/paste it from your confirmation email.'));
         }
         $cr = new Pluf_Crypt(md5(Pluf::f('secret_key')));
-        return explode(':', $cr->decrypt($encrypted), 3);
+        return explode(':', $cr->decrypt($encrypted), 4);
         
     }
 

src/IDF/Form/WikiConf.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/WikiCreate.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/WikiDelete.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Form/WikiUpdate.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Gconf.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Issue.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -169,6 +169,24 @@ class IDF_Issue extends Pluf_Model
         }
     }
 
+    function getGroupedRelatedIssues($opts = array(), $idsOnly = false)
+    {
+        $rels = $this->get_related_issues_list(array_merge($opts, array(
+               'view' => 'with_other_issue',
+        )));
+
+        $res = array();
+        foreach ($rels as $rel) {
+            $verb = $rel->verb;
+            if (!array_key_exists($verb, $res)) {
+                $res[$verb] = array();
+            }
+            $res[$verb][] = $idsOnly ? $rel->other_issue : $rel;
+        }
+
+        return $res;
+    }
+
     /**
      * Returns an HTML fragment used to display this issue in the
      * timeline.

src/IDF/IssueComment.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -155,10 +155,19 @@ class IDF_IssueComment extends Pluf_Model
                     $out .= __('Owner:'); break;
                 case 'lb':
                     $out .= __('Labels:'); break;
+                case 'rel':
+                    $out .= __('Relations:'); break;
                 }
                 $out .= '</strong>&nbsp;';
-                if ($w == 'lb') {
-                    $out .= Pluf_esc(implode(', ', $v));
+                if ($w == 'lb' || $w == 'rel') {
+                    foreach ($v as $t => $ls) {
+                        foreach ($ls as $l) {
+                            if ($t == 'rem') $out .= '<s>';
+                            $out .= Pluf_esc($l);
+                            if ($t == 'rem') $out .= '</s>';
+                            $out .= ' ';
+                        }
+                    }
                 } else {
                     $out .= Pluf_esc($v);
                 }

src/IDF/IssueFile.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/IssueRelation.php

@@ -0,0 +1,100 @@
+<?php
+/* -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- */
+/*
+# ***** BEGIN LICENSE BLOCK *****
+# This file is part of InDefero, an open source project management application.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
+#
+# InDefero is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# InDefero is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+#
+# ***** END LICENSE BLOCK ***** */
+
+/**
+ * A relation of one issue to another
+ */
+class IDF_IssueRelation extends Pluf_Model
+{
+    public $_model = __CLASS__;
+
+    function init()
+    {
+        $this->_a['table'] = 'idf_issuerelations';
+        $this->_a['model'] = __CLASS__;
+        $this->_a['cols'] = array(
+                             // It is mandatory to have an "id" column.
+                            'id' =>
+                            array(
+                                  'type' => 'Pluf_DB_Field_Sequence',
+                                  'blank' => true,
+                                  ),
+                            'issue' =>
+                            array(
+                                  'type' => 'Pluf_DB_Field_Foreignkey',
+                                  'model' => 'IDF_Issue',
+                                  'blank' => false,
+                                  'verbose' => __('issue'),
+                                  'relate_name' => 'related_issues',
+                                  ),
+                            'verb' =>
+                            array(
+                                  'type' => 'Pluf_DB_Field_Text',
+                                  'blank' => false,
+                                  'verbose' => __('verb'),
+                                  ),
+                            'other_issue' =>
+                            array(
+                                  'type' => 'Pluf_DB_Field_Foreignkey',
+                                  'model' => 'IDF_Issue',
+                                  'blank' => false,
+                                  'verbose' => __('other issue'),
+                                  'relate_name' => 'related_other_issues',
+                                  ),
+                            'submitter' =>
+                            array(
+                                  'type' => 'Pluf_DB_Field_Foreignkey',
+                                  'model' => 'Pluf_User',
+                                  'blank' => false,
+                                  'verbose' => __('submitter'),
+                                   ),
+                            'creation_dtime' =>
+                            array(
+                                  'type' => 'Pluf_DB_Field_Datetime',
+                                  'blank' => true,
+                                  'verbose' => __('creation date'),
+                                  ),
+                            );
+        $this->_a['idx'] = array(
+                            'creation_dtime_idx' =>
+                            array(
+                                  'col' => 'creation_dtime',
+                                  'type' => 'normal',
+                                  ),
+                            );
+        $issuetbl = $this->_con->pfx.'idf_issues';
+        $this->_a['views'] = array(
+            'with_other_issue' => array(
+                'join' => 'INNER JOIN '.$issuetbl.' ON other_issue='.$issuetbl.'.id',
+                'select' => $this->getSelect().', summary',
+                'props' => array('summary' => 'other_summary'),
+        ));
+    }
+
+    function preSave($create=false)
+    {
+        if ($this->id == '') {
+            $this->creation_dtime = gmdate('Y-m-d H:i:s');
+        }
+    }
+}

src/IDF/Key.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -80,7 +80,10 @@ class IDF_Key extends Pluf_Model
         if (preg_match('#^\[pubkey ([^\]]+)\]\s*(\S+)\s*\[end\]$#', $this->content, $m)) {
             return array('mtn', $m[1], $m[2]);
         }
-        else if (preg_match('#^ssh\-[a-z]{3}\s(\S+)(?:\s(\S+))?$#', $this->content, $m)) {
+        else if (preg_match('#^ssh\-(?:dss|rsa)\s(\S+)(?:\s(.*))?$#', $this->content, $m)) {
+            if (!isset($m[2])) {
+                $m[2] = "";
+            }
             return array('ssh', $m[2], $m[1]);
         }
 

src/IDF/Middleware.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -87,6 +87,8 @@ class IDF_Middleware
                               'markdown' => 'IDF_Template_Markdown',
                               'showuser' => 'IDF_Template_ShowUser',
                               'ashowuser' => 'IDF_Template_AssignShowUser',
+                              'appversion' => 'IDF_Template_AppVersion',
+                              'upload' => 'IDF_Template_Tag_UploadUrl',
                                             ));
         $params['modifiers'] = array_merge($params['modifiers'],
                                            array(

src/IDF/Migrations/10SshKey.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/11GitCache.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/12DownloadDesc.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/13NewReview.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/14Queue.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/15AddGconf.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/16AddUserMail.php

@@ -0,0 +1,43 @@
+<?php
+/* -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- */
+/*
+# ***** BEGIN LICENSE BLOCK *****
+# This file is part of InDefero, an open source project management application.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
+#
+# InDefero is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# InDefero is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+#
+# ***** END LICENSE BLOCK ***** */
+
+/**
+ * Add the new IDF_Gconf model.
+ *
+ */
+
+function IDF_Migrations_16AddUserMail_up($params=null)
+{
+    $db = Pluf::db();
+    $schema = new Pluf_DB_Schema($db);
+    $schema->model = new IDF_EmailAddress();
+    $schema->createTables();
+}
+
+function IDF_Migrations_16AddUserMail_down($params=null)
+{
+    $db = Pluf::db();
+    $schema = new Pluf_DB_Schema($db);
+    $schema->model = new IDF_EmailAddress();
+    $schema->dropTables();
+}

src/IDF/Migrations/17AddIssueRelations.php

@@ -0,0 +1,90 @@
+<?php
+/* -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- */
+/*
+# ***** BEGIN LICENSE BLOCK *****
+# This file is part of InDefero, an open source project management application.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
+#
+# InDefero is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# InDefero is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+#
+# ***** END LICENSE BLOCK ***** */
+
+/**
+ * Add the new IDF_IssueRelation model.
+ *
+ */
+
+function IDF_Migrations_17AddIssueRelations_up($params=null)
+{
+    $db = Pluf::db();
+    $schema = new Pluf_DB_Schema($db);
+    $schema->model = new IDF_IssueRelation();
+    $schema->createTables();
+
+    // change the serialization format for added / removed labels in IDF_IssueComment
+    $comments = Pluf::factory('IDF_IssueComment')->getList();
+    foreach ($comments as $comment) {
+        if (!isset($comment->changes['lb'])) continue;
+        $changes = $comment->changes;
+        $adds = $removals = array();
+        foreach ($comment->changes['lb'] as $lb) {
+            if (substr($lb, 0, 1) == '-')
+                $removals[] = substr($lb, 1);
+            else
+                $adds[] = $lb;
+        }
+        $changes['lb'] = array();
+        if (count($adds) > 0)
+            $changes['lb']['add'] = $adds;
+        if (count($removals) > 0)
+            $changes['lb']['rem'] = $removals;
+        $comment->changes = $changes;
+        $comment->update();
+    }
+}
+
+function IDF_Migrations_17AddIssueRelations_down($params=null)
+{
+    $db = Pluf::db();
+    $schema = new Pluf_DB_Schema($db);
+    $schema->model = new IDF_IssueRelation();
+    $schema->dropTables();
+
+    // change the serialization format for added / removed labels in IDF_IssueComment
+    $comments = Pluf::factory('IDF_IssueComment')->getList();
+    foreach ($comments as $comment) {
+        $changes = $comment->changes;
+        if (empty($changes))
+            continue;
+        if (isset($changes['lb'])) {
+            $labels = array();
+            foreach ($changes['lb'] as $type => $lbs) {
+                if (!is_array($lbs)) {
+                    $labels[] = $lbs;
+                    continue;
+                }
+                foreach ($lbs as $lb) {
+                    $labels[] = ($type == 'rem' ? '-' : '') . $lb;
+                }
+            }
+            $changes['lb'] = $labels;
+        }
+        // while we're at it, remove any 'rel' changes
+        unset($changes['rel']);
+        $comment->changes = $changes;
+        $comment->update();
+    }
+}
+

src/IDF/Migrations/18DownloadMD5.php

@@ -0,0 +1,63 @@
+<?php
+/* -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- */
+/*
+# ***** BEGIN LICENSE BLOCK *****
+# This file is part of InDefero, an open source project management application.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
+#
+# InDefero is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# InDefero is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+#
+# ***** END LICENSE BLOCK ***** */
+
+/**
+ * Add the md5 column for the download model.
+ */
+
+function IDF_Migrations_18DownloadMD5_up($params=null)
+{
+    // Add the row
+    $table = Pluf::factory('IDF_Upload')->getSqlTable();
+    $sql = array();
+    $sql['PostgreSQL'] = 'ALTER TABLE '.$table.' ADD COLUMN "md5" VARCHAR(32) DEFAULT \'\'';
+    $sql['MySQL'] = 'ALTER TABLE '.$table.' ADD COLUMN `md5` VARCHAR(32) DEFAULT \'\'';
+    $db = Pluf::db();
+    $engine = Pluf::f('db_engine');
+    if (!isset($sql[$engine])) {
+        throw new Exception('SQLite complex migration not supported.');
+    }
+    $db->execute($sql[$engine]);
+    
+    // Process md5 of already uploaded file
+    $files = Pluf::factory('IDF_Upload')->getList();
+    foreach ($files as $f) {
+        $f->md5 = md5_file (Pluf::f('upload_path') . '/' . $f->get_project()->shortname . '/files/' . $f->file);
+        $f->update();
+    }
+}
+
+function IDF_Migrations_18DownloadMD5_down($params=null)
+{
+    // Remove the row
+    $table = Pluf::factory('IDF_Upload')->getSqlTable();
+    $sql = array();
+    $sql['PostgreSQL'] = 'ALTER TABLE '.$table.' DROP COLUMN "md5"';
+    $sql['MySQL'] = 'ALTER TABLE '.$table.' DROP COLUMN `md5`';
+    $db = Pluf::db();
+    $engine = Pluf::f('db_engine');
+    if (!isset($sql[$engine])) {
+        throw new Exception('SQLite complex migration not supported.');
+    }
+    $db->execute($sql[$engine]);
+}

src/IDF/Migrations/1Download.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/2Search.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/3Attachments.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/4Timeline.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/5DescToText.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/6PrivateProject.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/7Wiki.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/8CodeReview.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/9ShortDescription.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Migrations/Backup.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -53,6 +53,8 @@ function IDF_Migrations_Backup_run($folder, $name=null)
                     'IDF_Scm_Cache_Git',
                     'IDF_Queue',
                     'IDF_Gconf',
+                    'IDF_EmailAddress',
+                    'IDF_IssueRelation',
                     );
     $db = Pluf::db();
     // Now, for each table, we dump the content in json, this is a
@@ -98,6 +100,8 @@ function IDF_Migrations_Backup_restore($folder, $name)
                     'IDF_Scm_Cache_Git',
                     'IDF_Queue',
                     'IDF_Gconf',
+                    'IDF_EmailAddress',
+                    'IDF_IssueRelation',
                     );
     $db = Pluf::db();
     $schema = new Pluf_DB_Schema($db);

src/IDF/Migrations/Install.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -50,6 +50,8 @@ function IDF_Migrations_Install_setup($params=null)
                     'IDF_Scm_Cache_Git',
                     'IDF_Queue',
                     'IDF_Gconf',
+                    'IDF_EmailAddress',
+                    'IDF_IssueRelation',
                     );
     $db = Pluf::db();
     $schema = new Pluf_DB_Schema($db);
@@ -107,6 +109,8 @@ function IDF_Migrations_Install_teardown($params=null)
                     'IDF_Tag',
                     'IDF_Commit',
                     'IDF_Project',
+                    'IDF_EmailAddress',
+                    'IDF_IssueRelation',
                     );
     $db = Pluf::db();
     $schema = new Pluf_DB_Schema($db);

src/IDF/Plugin/SyncGit.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Plugin/SyncGit/Cron.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -59,6 +59,16 @@ class IDF_Plugin_SyncGit_Cron
                 $out .= sprintf($template, $cmd, $key->login, $content)."\n";
             }
         }
+        $out = "# indefero start" . PHP_EOL . $out . "# indefero end" . PHP_EOL;
+        
+        // We update only the part of the file between IDF_START / IDF_END comment
+        $original_keys = file_get_contents($authorized_keys);
+        if (strstr($original_keys, "# indefero start") && strstr($original_keys, "# indefero end")) {
+            $out = preg_replace('/(#\sindefero\sstart).+(#\sindefero\send\s\s?)/isU', 
+                                $out, $original_keys);
+        } else {
+             $out .= $original_keys;   
+        }
         file_put_contents($authorized_keys, $out, LOCK_EX);
     }
 

src/IDF/Plugin/SyncGit/Serve.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Plugin/SyncMercurial.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Plugin/SyncMonotone.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2010 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -27,6 +27,18 @@
  */
 class IDF_Plugin_SyncMonotone
 {
+    private $old_err_rep = 0;
+
+    public function __construct()
+    {
+        $this->old_err_rep = error_reporting(0);
+    }
+
+    public function __destruct()
+    {
+        error_reporting($this->old_err_rep);
+    }
+
     /**
      * Entry point of the plugin.
      */
@@ -80,24 +92,33 @@ class IDF_Plugin_SyncMonotone
             return;
         }
 
+        // This guard cleans up on any kind of error, and here is how it works:
+        // As long as the guard is not committed, it keeps a reference to
+        // the given project. When the guard is destroyed and the reference
+        // is still present, it deletes the object. The deletion indirectly
+        // also calls into this plugin again, as the project delete hook
+        // will be called, that removes any changes we've made during the
+        // process.
+        $projectGuard = new IDF_Plugin_SyncMonotone_ModelGuard($project);
+
         $projecttempl = Pluf::f('mtn_repositories', false);
         if ($projecttempl === false) {
-            throw new IDF_Scm_Exception(
-                 __('"mtn_repositories" must be defined in your configuration file.')
+            $this->_diagnoseProblem(
+                 __('"mtn_repositories" must be defined in your configuration file')
             );
         }
 
         $usher_config = Pluf::f('mtn_usher_conf', false);
         if (!$usher_config || !is_writable($usher_config)) {
-            throw new IDF_Scm_Exception(
-                 __('"mtn_usher_conf" does not exist or is not writable.')
+            $this->_diagnoseProblem(
+                 __('"mtn_usher_conf" does not exist or is not writable')
             );
         }
 
         $mtnpostpush = realpath(dirname(__FILE__) . '/../../../scripts/mtn-post-push');
         if (!file_exists($mtnpostpush)) {
-            throw new IDF_Scm_Exception(sprintf(
-                __('Could not find mtn-post-push script "%s".'), $mtnpostpush
+            $this->_diagnoseProblem(sprintf(
+                __('Could not find mtn-post-push script "%s"'), $mtnpostpush
             ));
         }
 
@@ -110,13 +131,12 @@ class IDF_Plugin_SyncMonotone
              'monotonerc.in',
              'remote-automate-permissions.in',
              'hooks.d/',
-             // this is linked and not copied to be able to update
-             // the list of read-only commands on upgrades
-             'hooks.d/indefero_authorize_remote_automate.conf',
              'hooks.d/indefero_authorize_remote_automate.lua',
              'hooks.d/indefero_post_push.conf.in',
              'hooks.d/indefero_post_push.lua',
         );
+        // enable remote command execution of read-only commands
+        // only for public projects
         if (!$project->private) {
             // this is linked and not copied to be able to update
             // the list of read-only commands on upgrades
@@ -131,8 +151,8 @@ class IDF_Plugin_SyncMonotone
         }
         foreach ($confdir_contents as $content) {
             if (!file_exists($confdir.$content)) {
-                throw new IDF_Scm_Exception(sprintf(
-                    __('The configuration file %s is missing.'), $content
+                $this->_diagnoseProblem(sprintf(
+                    __('The configuration file "%s" is missing'), $content
                 ));
             }
         }
@@ -140,14 +160,15 @@ class IDF_Plugin_SyncMonotone
         $shortname = $project->shortname;
         $projectpath = sprintf($projecttempl, $shortname);
         if (file_exists($projectpath)) {
-            throw new IDF_Scm_Exception(sprintf(
-                __('The project path %s already exists.'), $projectpath
+            $this->_diagnoseProblem(sprintf(
+                __('The project path "%s" already exists'), $projectpath
             ));
         }
 
-        if (!mkdir($projectpath)) {
-            throw new IDF_Scm_Exception(sprintf(
-                __('The project path %s could not be created.'), $projectpath
+        if (!@mkdir($projectpath)) {
+            $this->_diagnoseProblem(sprintf(
+                __('The project path "%s" could not be created'),
+                $projectpath
             ));
         }
 
@@ -156,7 +177,7 @@ class IDF_Plugin_SyncMonotone
         //
         $dbfile = $projectpath.'/database.mtn';
         $cmd = sprintf('db init -d %s', escapeshellarg($dbfile));
-        self::_mtn_exec($cmd);
+        $this->_mtn_exec($cmd);
 
         //
         // step 2) create a server key
@@ -175,16 +196,17 @@ class IDF_Plugin_SyncMonotone
             escapeshellarg($projectpath),
             escapeshellarg($serverkey)
         );
-        self::_mtn_exec($cmd);
+        $this->_mtn_exec($cmd);
 
         //
         // step 3) create a client key, and save it in IDF
         //
         $keydir = Pluf::f('tmp_folder').'/mtn-client-keys';
         if (!file_exists($keydir)) {
-            if (!mkdir($keydir)) {
-                throw new IDF_Scm_Exception(sprintf(
-                    __('The key directory %s could not be created.'), $keydir
+            if (!@mkdir($keydir)) {
+                $this->_diagnoseProblem(sprintf(
+                    __('The key directory "%s" could not be created'),
+                    $keydir
                 ));
             }
         }
@@ -194,14 +216,14 @@ class IDF_Plugin_SyncMonotone
             escapeshellarg($keydir),
             escapeshellarg($clientkey_name)
         );
-        $keyinfo = self::_mtn_exec($cmd);
+        $keyinfo = $this->_mtn_exec($cmd);
 
         $parsed_keyinfo = array();
         try {
             $parsed_keyinfo = IDF_Scm_Monotone_BasicIO::parse($keyinfo);
         }
         catch (Exception $e) {
-            throw new IDF_Scm_Exception(sprintf(
+            $this->_diagnoseProblem(sprintf(
                 __('Could not parse key information: %s'), $e->getMessage()
             ));
         }
@@ -219,13 +241,13 @@ class IDF_Plugin_SyncMonotone
             escapeshellarg($keydir),
             escapeshellarg($clientkey_hash)
         );
-        $clientkey_pubdata = self::_mtn_exec($cmd);
+        $clientkey_pubdata = $this->_mtn_exec($cmd);
 
         $cmd = sprintf('au put_public_key --db=%s %s',
             escapeshellarg($dbfile),
             escapeshellarg($clientkey_pubdata)
         );
-        self::_mtn_exec($cmd);
+        $this->_mtn_exec($cmd);
 
         //
         // step 4) setup the configuration
@@ -238,18 +260,20 @@ class IDF_Plugin_SyncMonotone
         foreach ($confdir_contents as $content) {
             $filepath = $projectpath.'/'.$content;
             if (substr($content, -1) == '/') {
-                if (!mkdir($filepath)) {
-                    throw new IDF_Scm_Exception(sprintf(
-                        __('Could not create configuration directory "%s"'), $filepath
+                if (!@mkdir($filepath)) {
+                    $this->_diagnoseProblem(sprintf(
+                        __('Could not create configuration directory "%s"'),
+                        $filepath
                     ));
                 }
                 continue;
             }
 
             if (substr($content, -3) != '.in') {
-                if (!symlink($confdir.$content, $filepath)) {
-                    IDF_Scm_Exception(sprintf(
-                        __('Could not create symlink "%s"'), $filepath
+                if (!@symlink($confdir.$content, $filepath)) {
+                    $this->_diagnoseProblem(sprintf(
+                        __('Could not create symlink for configuration file "%s"'),
+                        $filepath
                     ));
                 }
                 continue;
@@ -264,9 +288,10 @@ class IDF_Plugin_SyncMonotone
 
             // remove the .in
             $filepath = substr($filepath, 0, -3);
-            if (file_put_contents($filepath, $filecontents, LOCK_EX) === false) {
-                throw new IDF_Scm_Exception(sprintf(
-                    __('Could not write configuration file "%s"'), $filepath
+            if (@file_put_contents($filepath, $filecontents, LOCK_EX) === false) {
+                $this->_diagnoseProblem(sprintf(
+                    __('Could not write configuration file "%s"'),
+                    $filepath
                 ));
             }
         }
@@ -280,7 +305,7 @@ class IDF_Plugin_SyncMonotone
             $parsed_config = IDF_Scm_Monotone_BasicIO::parse($usher_rc);
         }
         catch (Exception $e) {
-            throw new IDF_Scm_Exception(sprintf(
+            $this->_diagnoseProblem(sprintf(
                 __('Could not parse usher configuration in "%s": %s'),
                 $usher_config, $e->getMessage()
             ));
@@ -291,7 +316,7 @@ class IDF_Plugin_SyncMonotone
             foreach ($stanzas as $stanza_line) {
                 if ($stanza_line['key'] == 'server' &&
                     $stanza_line['values'][0] == $shortname) {
-                    throw new IDF_Scm_Exception(sprintf(
+                    $this->_diagnoseProblem(sprintf(
                         __('usher configuration already contains a server '.
                            'entry named "%s"'),
                         $shortname
@@ -315,9 +340,10 @@ class IDF_Plugin_SyncMonotone
 
         // FIXME: more sanity - what happens on failing writes? we do not
         // have a backup copy of usher.conf around...
-        if (file_put_contents($usher_config, $usher_rc, LOCK_EX) === false) {
-            throw new IDF_Scm_Exception(sprintf(
-                __('Could not write usher configuration file "%s"'), $usher_config
+        if (@file_put_contents($usher_config, $usher_rc, LOCK_EX) === false) {
+            $this->_diagnoseProblem(sprintf(
+                __('Could not write usher configuration file "%s"'),
+                $usher_config
             ));
         }
 
@@ -325,6 +351,9 @@ class IDF_Plugin_SyncMonotone
         // step 6) reload usher to pick up the new configuration
         //
         IDF_Scm_Monotone_Usher::reload();
+
+        // commit the guard, so the newly created project is not deleted
+        $projectGuard->commit();
     }
 
     /**
@@ -345,8 +374,8 @@ class IDF_Plugin_SyncMonotone
         $mtn = IDF_Scm_Monotone::factory($project);
         $stdio = $mtn->getStdio();
 
-        $projectpath = self::_get_project_path($project);
-        $auth_ids    = self::_get_authorized_user_ids($project);
+        $projectpath = $this->_get_project_path($project);
+        $auth_ids    = $this->_get_authorized_user_ids($project);
         $key_ids     = array();
         foreach ($auth_ids as $auth_id) {
             $sql = new Pluf_SQL('user=%s', array($auth_id));
@@ -361,9 +390,10 @@ class IDF_Plugin_SyncMonotone
 
         $write_permissions = implode("\n", $key_ids);
         $rcfile = $projectpath.'/write-permissions';
-        if (file_put_contents($rcfile, $write_permissions, LOCK_EX) === false) {
-            throw new IDF_Scm_Exception(sprintf(
-                __('Could not write write-permissions file "%s"'), $rcfile
+        if (@file_put_contents($rcfile, $write_permissions, LOCK_EX) === false) {
+            $this->_diagnoseProblem(sprintf(
+                __('Could not write write-permissions file "%s"'),
+                $rcfile
             ));
         }
 
@@ -382,11 +412,13 @@ class IDF_Plugin_SyncMonotone
                 array('key' => 'allow', 'values' => array('*')),
             );
         }
+
         $read_permissions = IDF_Scm_Monotone_BasicIO::compile(array($stanza));
         $rcfile = $projectpath.'/read-permissions';
-        if (file_put_contents($rcfile, $read_permissions, LOCK_EX) === false) {
-            throw new IDF_Scm_Exception(sprintf(
-                __('Could not write read-permissions file "%s"'), $rcfile
+        if (@file_put_contents($rcfile, $read_permissions, LOCK_EX) === false) {
+            $this->_diagnoseProblem(sprintf(
+                __('Could not write read-permissions file "%s"'),
+                $rcfile
             ));
         }
 
@@ -401,16 +433,16 @@ class IDF_Plugin_SyncMonotone
 
         $serverRestartRequired = false;
         if ($project->private && file_exists($projectfile) && is_link($projectfile)) {
-            if (!unlink($projectfile)) {
-                IDF_Scm_Exception(sprintf(
+            if (!@unlink($projectfile)) {
+                $this->_diagnoseProblem(sprintf(
                     __('Could not remove symlink "%s"'), $projectfile
                 ));
             }
             $serverRestartRequired = true;
         } else
         if (!$project->private && !file_exists($projectfile)) {
-            if (!symlink($templatefile, $projectfile)) {
-                throw new IDF_Scm_Exception(sprintf(
+            if (!@symlink($templatefile, $projectfile)) {
+                $this->_diagnoseProblem(sprintf(
                     __('Could not create symlink "%s"'), $projectfile
                 ));
             }
@@ -422,6 +454,9 @@ class IDF_Plugin_SyncMonotone
             // seems to be ignored when the server should be started
             // again immediately afterwards
             IDF_Scm_Monotone_Usher::killServer($project->shortname);
+            // give usher some time to cool down, otherwise it might hang
+            // (see https://code.monotone.ca/p/contrib/issues/175/)
+            sleep(2);
             IDF_Scm_Monotone_Usher::startServer($project->shortname);
         }
     }
@@ -443,8 +478,8 @@ class IDF_Plugin_SyncMonotone
 
         $usher_config = Pluf::f('mtn_usher_conf', false);
         if (!$usher_config || !is_writable($usher_config)) {
-            throw new IDF_Scm_Exception(
-                 __('"mtn_usher_conf" does not exist or is not writable.')
+            $this->_diagnoseProblem(
+                 __('"mtn_usher_conf" does not exist or is not writable')
             );
         }
 
@@ -453,16 +488,16 @@ class IDF_Plugin_SyncMonotone
 
         $projecttempl = Pluf::f('mtn_repositories', false);
         if ($projecttempl === false) {
-            throw new IDF_Scm_Exception(
-                 __('"mtn_repositories" must be defined in your configuration file.')
+            $this->_diagnoseProblem(
+                 __('"mtn_repositories" must be defined in your configuration file')
             );
         }
 
         $projectpath = sprintf($projecttempl, $shortname);
         if (file_exists($projectpath)) {
-            if (!self::_delete_recursive($projectpath)) {
-                throw new IDF_Scm_Exception(sprintf(
-                    __('One or more paths underknees %s could not be deleted.'), $projectpath
+            if (!$this->_delete_recursive($projectpath)) {
+                $this->_diagnoseProblem(sprintf(
+                    __('One or more paths underneath %s could not be deleted'), $projectpath
                 ));
             }
         }
@@ -473,8 +508,9 @@ class IDF_Plugin_SyncMonotone
         if ($keyname && $keyhash &&
             file_exists($keydir .'/'. $keyname . '.' . $keyhash)) {
             if (!@unlink($keydir .'/'. $keyname . '.' . $keyhash)) {
-                throw new IDF_Scm_Exception(sprintf(
-                    __('Could not delete client private key %s'), $keyname
+                $this->_diagnoseProblem(sprintf(
+                    __('Could not delete client private key "%s"'),
+                    $keyname
                 ));
             }
         }
@@ -485,7 +521,7 @@ class IDF_Plugin_SyncMonotone
             $parsed_config = IDF_Scm_Monotone_BasicIO::parse($usher_rc);
         }
         catch (Exception $e) {
-            throw new IDF_Scm_Exception(sprintf(
+            $this->_diagnoseProblem(sprintf(
                 __('Could not parse usher configuration in "%s": %s'),
                 $usher_config, $e->getMessage()
             ));
@@ -505,9 +541,10 @@ class IDF_Plugin_SyncMonotone
 
         // FIXME: more sanity - what happens on failing writes? we do not
         // have a backup copy of usher.conf around...
-        if (file_put_contents($usher_config, $usher_rc, LOCK_EX) === false) {
-            throw new IDF_Scm_Exception(sprintf(
-                __('Could not write usher configuration file "%s"'), $usher_config
+        if (@file_put_contents($usher_config, $usher_rc, LOCK_EX) === false) {
+            $this->_diagnoseProblem(sprintf(
+                __('Could not write usher configuration file "%s"'),
+                $usher_config
             ));
         }
 
@@ -528,6 +565,8 @@ class IDF_Plugin_SyncMonotone
             return;
         }
 
+        $keyGuard = new IDF_Plugin_SyncMonotone_ModelGuard($key);
+
         foreach (Pluf::factory('IDF_Project')->getList() as $project) {
             $conf = new IDF_Conf();
             $conf->setProject($project);
@@ -535,8 +574,8 @@ class IDF_Plugin_SyncMonotone
             if ($scm != 'mtn')
                 continue;
 
-            $projectpath = self::_get_project_path($project);
-            $auth_ids    = self::_get_authorized_user_ids($project);
+            $projectpath = $this->_get_project_path($project);
+            $auth_ids    = $this->_get_authorized_user_ids($project);
             if (!in_array($key->user, $auth_ids))
                 continue;
 
@@ -556,7 +595,7 @@ class IDF_Plugin_SyncMonotone
                     $parsed_read_perms = IDF_Scm_Monotone_BasicIO::parse($read_perms);
                 }
                 catch (Exception $e) {
-                    throw new IDF_Scm_Exception(sprintf(
+                    $this->_diagnoseProblem(sprintf(
                         __('Could not parse read-permissions for project "%s": %s'),
                         $shortname, $e->getMessage()
                     ));
@@ -598,10 +637,11 @@ class IDF_Plugin_SyncMonotone
 
                 $read_perms = IDF_Scm_Monotone_BasicIO::compile($parsed_read_perms);
 
-                if (file_put_contents($projectpath.'/read-permissions',
+                if (@file_put_contents($projectpath.'/read-permissions',
                                       $read_perms, LOCK_EX) === false) {
-                    throw new IDF_Scm_Exception(sprintf(
-                        __('Could not write read-permissions for project "%s"'), $shortname
+                    $this->_diagnoseProblem(sprintf(
+                        __('Could not write read-permissions for project "%s"'),
+                        $shortname
                     ));
                 }
             }
@@ -611,9 +651,9 @@ class IDF_Plugin_SyncMonotone
             if (!in_array('*', $lines) && !in_array($mtn_key_id, $lines)) {
                 $lines[] = $mtn_key_id;
             }
-            if (file_put_contents($projectpath.'/write-permissions',
+            if (@file_put_contents($projectpath.'/write-permissions',
                                   implode("\n", $lines) . "\n", LOCK_EX) === false) {
-                throw new IDF_Scm_Exception(sprintf(
+                $this->_diagnoseProblem(sprintf(
                     __('Could not write write-permissions file for project "%s"'),
                     $shortname
                 ));
@@ -623,6 +663,8 @@ class IDF_Plugin_SyncMonotone
             $stdio = $mtn->getStdio();
             $stdio->exec(array('put_public_key', $key->content));
         }
+
+        $keyGuard->commit();
     }
 
     /**
@@ -651,8 +693,8 @@ class IDF_Plugin_SyncMonotone
             if ($scm != 'mtn')
                 continue;
 
-            $projectpath = self::_get_project_path($project);
-            $auth_ids    = self::_get_authorized_user_ids($project);
+            $projectpath = $this->_get_project_path($project);
+            $auth_ids    = $this->_get_authorized_user_ids($project);
             if (!in_array($key->user, $auth_ids))
                 continue;
 
@@ -672,7 +714,7 @@ class IDF_Plugin_SyncMonotone
                     $parsed_read_perms = IDF_Scm_Monotone_BasicIO::parse($read_perms);
                 }
                 catch (Exception $e) {
-                    throw new IDF_Scm_Exception(sprintf(
+                    $this->_diagnoseProblem(sprintf(
                         __('Could not parse read-permissions for project "%s": %s'),
                         $shortname, $e->getMessage()
                     ));
@@ -693,10 +735,11 @@ class IDF_Plugin_SyncMonotone
 
                 $read_perms = IDF_Scm_Monotone_BasicIO::compile($parsed_read_perms);
 
-                if (file_put_contents($projectpath.'/read-permissions',
+                if (@file_put_contents($projectpath.'/read-permissions',
                                       $read_perms, LOCK_EX) === false) {
-                    throw new IDF_Scm_Exception(sprintf(
-                        __('Could not write read-permissions for project "%s"'), $shortname
+                    $this->_diagnoseProblem(sprintf(
+                        __('Could not write read-permissions for project "%s"'),
+                        $shortname
                     ));
                 }
             }
@@ -711,9 +754,9 @@ class IDF_Plugin_SyncMonotone
                     continue;
                 }
             }
-            if (file_put_contents($projectpath.'/write-permissions',
-                                  implode("\n", $lines) . "\n", LOCK_EX) === false) {
-                throw new IDF_Scm_Exception(sprintf(
+            if (@file_put_contents($projectpath.'/write-permissions',
+                                   implode("\n", $lines) . "\n", LOCK_EX) === false) {
+                $this->_diagnoseProblem(sprintf(
                     __('Could not write write-permissions file for project "%s"'),
                     $shortname
                 ));
@@ -762,7 +805,43 @@ class IDF_Plugin_SyncMonotone
         ));
     }
 
-    private static function _get_authorized_user_ids($project)
+    private function _get_project_path($project)
+    {
+        $projecttempl = Pluf::f('mtn_repositories', false);
+        if ($projecttempl === false) {
+            $this->_diagnoseProblem(
+                 __('"mtn_repositories" must be defined in your configuration file.')
+            );
+        }
+
+        $projectpath = sprintf($projecttempl, $project->shortname);
+        if (!file_exists($projectpath)) {
+            $this->_diagnoseProblem(sprintf(
+                __('The project path %s does not exists.'), $projectpath
+            ));
+        }
+        return $projectpath;
+    }
+
+    private function _mtn_exec($cmd)
+    {
+        $fullcmd = sprintf('%s %s %s',
+            Pluf::f('idf_exec_cmd_prefix', ''),
+            Pluf::f('mtn_path', 'mtn'),
+            $cmd
+        );
+
+        $output = $return = null;
+        exec($fullcmd, $output, $return);
+        if ($return != 0) {
+            $this->_diagnoseProblem(sprintf(
+                __('The command "%s" could not be executed.'), $cmd
+            ));
+        }
+        return implode("\n", $output);
+    }
+
+    private function _get_authorized_user_ids($project)
     {
         $mem = $project->getMembershipData();
         $members = array_merge((array)$mem['members'],
@@ -775,43 +854,7 @@ class IDF_Plugin_SyncMonotone
         return $userids;
     }
 
-    private static function _get_project_path($project)
-    {
-        $projecttempl = Pluf::f('mtn_repositories', false);
-        if ($projecttempl === false) {
-            throw new IDF_Scm_Exception(
-                 __('"mtn_repositories" must be defined in your configuration file.')
-            );
-        }
-
-        $projectpath = sprintf($projecttempl, $project->shortname);
-        if (!file_exists($projectpath)) {
-            throw new IDF_Scm_Exception(sprintf(
-                __('The project path %s does not exists.'), $projectpath
-            ));
-        }
-        return $projectpath;
-    }
-
-    private static function _mtn_exec($cmd)
-    {
-        $fullcmd = sprintf('%s %s %s',
-            Pluf::f('idf_exec_cmd_prefix', ''),
-            Pluf::f('mtn_path', 'mtn'),
-            $cmd
-        );
-
-        $output = $return = null;
-        exec($fullcmd, $output, $return);
-        if ($return != 0) {
-            throw new IDF_Scm_Exception(sprintf(
-                __('The command "%s" could not be executed.'), $cmd
-            ));
-        }
-        return implode("\n", $output);
-    }
-
-    private static function _delete_recursive($path)
+    private function _delete_recursive($path)
     {
         if (is_file($path) || is_link($path)) {
             return @unlink($path);
@@ -821,10 +864,48 @@ class IDF_Plugin_SyncMonotone
             $scan = glob(rtrim($path, '/') . '/*');
             $status = 0;
             foreach ($scan as $subpath) {
-                $status |= self::_delete_recursive($subpath);
+                $status |= $this->_delete_recursive($subpath);
             }
-            $status |= rmdir($path);
+            $status |= @rmdir($path);
             return $status;
         }
     }
+
+    private function _diagnoseProblem($msg)
+    {
+        $system_err = error_get_last();
+        if (!empty($system_err)) {
+            $msg .= ': '.$system_err['message'];
+        }
+
+        error_reporting($this->old_err_rep);
+        throw new IDF_Scm_Exception($msg);
+    }
 }
+
+/**
+ * A simple helper class that deletes the model instance if
+ * it is not committed
+ */
+class IDF_Plugin_SyncMonotone_ModelGuard
+{
+    private $model;
+
+    public function __construct(Pluf_Model $m)
+    {
+        $this->model = $m;
+    }
+
+    public function __destruct()
+    {
+        if ($this->model == null)
+            return;
+        $this->model->delete();
+    }
+
+    public function commit()
+    {
+        $this->model = null;
+    }
+}
+

src/IDF/Plugin/SyncMonotone/hooks.d/indefero_authorize_remote_automate.lua

@@ -1,6 +1,6 @@
 -- ***** BEGIN LICENSE BLOCK *****
 -- This file is part of InDefero, an open source project management application.
--- Copyright (C) 2011 Céondo Ltd and contributors.
+-- Copyright (C) 2008-2011 Céondo Ltd and contributors.
 -- Copyright (C) 2010 Thomas Keller <me@thomaskeller.biz>
 --                    Richard Levitte <richard@levitte.org>
 --

src/IDF/Plugin/SyncMonotone/hooks.d/indefero_post_push.lua

@@ -1,6 +1,6 @@
 -- ***** BEGIN LICENSE BLOCK *****
 -- This file is part of InDefero, an open source project management application.
--- Copyright (C) 2011 Céondo Ltd and contributors.
+-- Copyright (C) 2008-2011 Céondo Ltd and contributors.
 --
 -- InDefero is free software; you can redistribute it and/or modify
 -- it under the terms of the GNU General Public License as published by

src/IDF/Plugin/SyncMonotone/monotonerc.in

@@ -1,6 +1,6 @@
 -- ***** BEGIN LICENSE BLOCK *****
 -- This file is part of InDefero, an open source project management application.
--- Copyright (C) 2011 Céondo Ltd and contributors.
+-- Copyright (C) 2008-2011 Céondo Ltd and contributors.
 --
 -- InDefero is free software; you can redistribute it and/or modify
 -- it under the terms of the GNU General Public License as published by

src/IDF/Plugin/SyncSvn.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Precondition.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -190,7 +190,12 @@ class IDF_Precondition
             return true; // Again need authentication error
         }
         $request->user = $users[0];
-        IDF_Middleware::setRights($request);
+        
+        // Don't try to load projects rights access if we are not in one
+        if ($request->query !== "/api/") {
+            IDF_Middleware::setRights($request);
+        }
+            
         return true;
     }
 

src/IDF/Project.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -140,7 +140,48 @@ class IDF_Project extends Pluf_Model
      * @param IDF_Tag Subfilter with a label (null)
      * @return int Count
      */
-    public function getIssueCountByStatus($status='open', $label=null)
+    public function getIssueCountByOwner($status='open')
+    {
+        switch ($status) {
+        case 'open':
+            $tags = implode(',', $this->getTagIdsByStatus('open'));
+            break;
+        case 'closed':
+        default:
+            $tags = implode(',', $this->getTagIdsByStatus('closed'));
+            break;
+        }
+        $sqlIssueTable = Pluf::factory('IDF_Issue')->getSqlTable();
+        $query = "SELECT uid AS id,COUNT(uid) AS nb
+FROM (
+    SELECT COALESCE(owner, -1) AS uid
+    FROM $sqlIssueTable
+    WHERE status IN ($tags)
+    ) AS ff
+GROUP BY uid";
+
+        $db = Pluf::db();
+        $dbData = $db->select($query);
+        $ownerStatistics = array();
+        foreach ($dbData as $k => $v) {
+            $key = ($v['id'] === '-1') ? null : $v['id'];
+            $ownerStatistics[$key] = (int)$v['nb'];
+        }
+
+        arsort($ownerStatistics);
+
+        return $ownerStatistics;
+    }
+
+    /**
+     * Returns the number of open/closed issues.
+     *
+     * @param string Status ('open'), 'closed'
+     * @param IDF_Tag Subfilter with a label (null)
+     * @param array Restrict further to a list of ids
+     * @return int Count
+     */
+    public function getIssueCountByStatus($status='open', $label=null, $ids=array())
     {
         switch ($status) {
         case 'open':
@@ -163,12 +204,48 @@ class IDF_Project extends Pluf_Model
             $sql2 = new Pluf_SQL('idf_tag_id=%s', array($label->id));
             $sql->SAnd($sql2);
         }
+        if (count($ids) > 0) {
+            $sql2 = new Pluf_SQL(sprintf('id IN (%s)', implode(', ', $ids)));
+            $sql->SAnd($sql2);
+        }
         $params = array('filter' => $sql->gen());
         if (!is_null($label)) { $params['view'] = 'join_tags'; }
         $gissue = new IDF_Issue();
         return $gissue->getCount($params);
     }
 
+    /**
+     * Get the tags for a specific list of issues.
+     *
+     * @param string Status ('open') or 'closed'
+     * @param array A list of issue ids
+     * @return array An array of tag objects
+     */
+    public function getTagsByIssues($issue_ids=array())
+    {
+        // make the below query always a valid one
+        if (count($issue_ids) == 0) $issue_ids[] = 0;
+
+        $assocTable = $this->_con->pfx.'idf_issue_idf_tag_assoc';
+        $query = sprintf(
+            'SELECT DISTINCT idf_tag_id FROM %s '.
+            'WHERE idf_issue_id IN (%s) '.
+            'GROUP BY idf_tag_id',
+            $assocTable, implode(',', $issue_ids)
+        );
+
+        $db = Pluf::db();
+        $dbData = $db->select($query);
+        $ids = array(0);
+        foreach ($dbData as $data) {
+            $ids[] = $data['idf_tag_id'];
+        }
+
+        $sql = new Pluf_SQL(sprintf('id IN (%s)', implode(', ', $ids)));
+        $model = new IDF_Tag();
+        return $model->getList(array('filter' => $sql->gen()));
+    }
+
     /**
      * Get the open/closed tag ids as they are often used when doing
      * listings.
@@ -233,6 +310,29 @@ class IDF_Project extends Pluf_Model
         return $tags;
     }
 
+    /**
+     * Returns a list of relations which are available in this project as
+     * associative array. Each key-value pair marks a set of orthogonal
+     * relations. To ease processing, each of these pairs is included twice
+     * in the array, once as key1 => key2 and once as key2 => key1.
+     *
+     * @return array List of relation names
+     */
+    public function getRelationsFromConfig()
+    {
+        $conf = $this->getConf();
+        $rel = $conf->getVal('issue_relations', IDF_Form_IssueTrackingConf::init_relations);
+        $relations = array();
+        foreach (preg_split("/\015\012|\015|\012/", $rel, -1, PREG_SPLIT_NO_EMPTY) as $s) {
+            $verbs = preg_split("/\s*,\s*/", $s, 2);
+            if (count($verbs) == 1)
+                $relations += array($verbs[0] => $verbs[0]);
+            else
+                $relations += array($verbs[0] => $verbs[1], $verbs[1] => $verbs[0]);
+        }
+        return $relations;
+    }
+
     /**
      * Return membership data.
      *
@@ -352,7 +452,11 @@ class IDF_Project extends Pluf_Model
         foreach ($this->_con->select($sql) as $idc) {
             $tag = new IDF_Tag($idc['id']);
             $tag->nb_use = $idc['nb_use'];
-            $tags[] = $tag;
+            // group by class
+            if (!array_key_exists($tag->class, $tags)) {
+                $tags[$tag->class] = array();
+            }
+            $tags[$tag->class][] = $tag;
         }
         return new Pluf_Template_ContextVars($tags);
     }

src/IDF/Queue.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Review.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Review/Comment.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Review/FileComment.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Review/Patch.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/IDF/Scm.php

@@ -3,7 +3,7 @@
 /*
 # ***** BEGIN LICENSE BLOCK *****
 # This file is part of InDefero, an open source project management application.
-# Copyright (C) 2008 Céondo Ltd and contributors.
+# Copyright (C) 2008-2011 Céondo Ltd and contributors.
 #
 # InDefero is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -88,22 +88,36 @@ class IDF_Scm
     }
 
     /**
-     * Run exec and log some information.
+     * Runs the given command and log some information.
+     *
+     * A previous version used plain exec(), but this should not be used
+     * for various reasons, one being that this command does not preserve
+     * trailing whitespace, which is essential for proper diff parsing.
      *
      * @param $caller Calling method
      * @param $cmd Command to run
      * @param &$out Array of output
      * @param &$return Return value
-     * @return string Last line of the command
      */
     public static function exec($caller, $cmd, &$out=null, &$return=null)
     {
+        $return = -1;
         Pluf_Log::stime('timer');
-        $ret = exec($cmd, $out, $return);
+        $fp = popen($cmd, 'r');
+        $buf = '';
+        if ($fp !== false) {
+            while (!feof($fp)) {
+                $buf .= fread($fp, 1024);
+            }
+            $return = pclose($fp);
+        }
+        $out = preg_split('/\r\n|\r|\n/', $buf);
+        $elem = count($out);
+        if ($elem > 0 && $out[$elem-1] === '')
+            unset($out[$elem-1]);
         Pluf_Log::perf(array($caller, $cmd, Pluf_Log::etime('timer', 'total_exec')));
         Pluf_Log::debug(array($caller, $cmd, $out));
         Pluf_Log::inc('exec_calls');
-        return $ret;
     }
 
     /**
@@ -325,7 +339,8 @@ class IDF_Scm
      * stdClass object {
      *  'additions' => array('path/to/file', 'path/to/directory', ...),
      *  'deletions' => array('path/to/file', 'path/to/directory', ...),
-     *  'renames' => array('old/path/to/file' => 'new/path/to/file', ...)
+     *  'renames' => array('old/path/to/file' => 'new/path/to/file', ...),
+     *  'copies' => array('path/to/source' => 'path/to/target', ...),
      *  'patches' => array('path/to/file', ...),
      *  'properties' => array('path/to/file' => array(
      *              'propname' => 'propvalue', 'deletedprop' => null, ...)
@@ -473,5 +488,14 @@ class IDF_Scm
     {
         return str_replace('%2F', '/', rawurlencode($path));
     }
+
+    /**
+     * Returns the number of slashes and preceeding path components
+     * that should be stripped from paths in the SCM's diff output
+     */
+    public function getDiffPathStripLevel()
+    {
+        return 0;
+    }
 }